View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_64 (Length: 342)
Name: NF18674_low_64
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_64 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 46502818 - 46503155
Alignment:
| Q |
6 |
agaagcaaagggataacaaaaactaactaactaaaaacacatgacttgagaattcaaatgacttnnnnnnnncaaagacaaatttacatatgattttgta |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46502818 |
agaatcaaagggataacaaaaactagccaactaaaaacacatgacttgagaattcaaatgacttaaaaaaaacaaagacaaatttacatatgattttgta |
46502917 |
T |
|
| Q |
106 |
attttaatatatgtatgtact-atttaacatttaaggatgaaaaagactatttagccctatgttttccattggttcttacttctttgtaaggaagttaca |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46502918 |
attttaatatatgtatgtacttatttaacatttaaggatgaaaaagactatttagccctatgttttccattggttcttgcttctttgtaaggaagttaca |
46503017 |
T |
|
| Q |
205 |
attctctctgctttatctcatactttttcttttgtctctttctctcacataaaccaactttattcccactaaactcacctctaaaaagaagatgatcctc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503018 |
attctctctgctttatctcatactttttcttttgtctctttctctcacataaaccaactttattcccactaaactcacctctaaaaagaagatgatcctc |
46503117 |
T |
|
| Q |
305 |
tcttgatcctccttgagttcataaaccaacataccttc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503118 |
tcttgatcctccttgagttcataaaccaacataccttc |
46503155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University