View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18674_low_65 (Length: 341)

Name: NF18674_low_65
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18674_low_65
NF18674_low_65
[»] chr1 (6 HSPs)
chr1 (17-332)||(32741055-32741370)
chr1 (17-135)||(32738188-32738306)
chr1 (233-331)||(23432079-23432178)
chr1 (55-121)||(16789266-16789332)
chr1 (176-205)||(3387980-3388009)
chr1 (168-205)||(23636311-23636348)
[»] chr6 (8 HSPs)
chr6 (167-332)||(19294537-19294705)
chr6 (167-299)||(34013722-34013857)
chr6 (173-321)||(14494230-14494382)
chr6 (167-299)||(34010993-34011128)
chr6 (167-321)||(12844123-12844280)
chr6 (167-332)||(17540225-17540390)
chr6 (167-261)||(31414691-31414785)
chr6 (236-317)||(57220-57302)
[»] chr4 (9 HSPs)
chr4 (167-326)||(54305833-54305996)
chr4 (167-332)||(40288940-40289108)
chr4 (174-326)||(45612230-45612385)
chr4 (167-299)||(55680921-55681057)
chr4 (167-261)||(3420075-3420171)
chr4 (167-320)||(29987890-29988045)
chr4 (167-203)||(44508013-44508049)
chr4 (167-203)||(2641477-2641513)
chr4 (167-199)||(7762794-7762826)
[»] chr2 (8 HSPs)
chr2 (167-332)||(26576271-26576439)
chr2 (167-326)||(9929866-9930028)
chr2 (168-332)||(34409369-34409535)
chr2 (194-326)||(32200654-32200789)
chr2 (167-315)||(17651476-17651626)
chr2 (190-326)||(13039093-13039231)
chr2 (233-314)||(18724599-18724681)
chr2 (230-303)||(41849235-41849309)
[»] chr7 (6 HSPs)
chr7 (167-302)||(22291047-22291185)
chr7 (167-267)||(44572316-44572418)
chr7 (207-326)||(45215847-45215969)
chr7 (167-320)||(27616534-27616701)
chr7 (233-317)||(10678514-10678599)
chr7 (267-332)||(37338654-37338719)
[»] chr8 (5 HSPs)
chr8 (194-317)||(15131778-15131905)
chr8 (173-267)||(37855284-37855379)
chr8 (173-225)||(18393356-18393408)
chr8 (233-293)||(28421288-28421349)
chr8 (167-201)||(15850241-15850275)
[»] chr3 (7 HSPs)
chr3 (238-332)||(10516026-10516121)
chr3 (170-250)||(30121035-30121117)
chr3 (267-320)||(26565520-26565573)
chr3 (238-320)||(11410903-11410985)
chr3 (167-205)||(25092165-25092203)
chr3 (269-318)||(10657329-10657378)
chr3 (233-317)||(43921801-43921883)
[»] chr5 (3 HSPs)
chr5 (238-320)||(40838121-40838204)
chr5 (166-203)||(32676422-32676459)
chr5 (266-321)||(38989145-38989201)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 32741370 - 32741055
Alignment:
Q  17 attgaataccaaaaacaaatttcaactgagcttacaacctcttgacaagggtcctgttcctccttcagggccttctggctgcacctttatccccggaagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32741370 attgaataccaaaaacaaatttcaactgagcttacaacctcttgacaagggtcctgttcctccttcagggccttctggctgcacctttatccccggaagt 32741271  T
Q  117 ggtggcccagtctgccctcctatgaagcacgaacacctttaagattaggcgtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcc 216  Q
    ||||||||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32741270 ggtggcccagtctgccctcctatgaagcacggacacctccaggattaggcgtgtctgacactcctatgacactcgtacgacacgtgtcgaaccagcgtcc 32741171  T
Q  217 taaataattgttattttttacttcgacactcctacgatcggtgtccgacactatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32741170 taaataattgttattttttacttcgacactcctacgatcggtgtccgacactatataacacttatgcgagccgtgtcaaacaactcaggcaaatatctaa 32741071  T
Q  317 aacaagttttctctct 332  Q
    ||||| |||| |||||    
T  32741070 aacaatttttttctct 32741055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 32738306 - 32738188
Alignment:
Q  17 attgaataccaaaaacaaatttcaactgagcttacaacctcttgacaagggtcctgttcctccttcagggccttctggctgcacctttatccccggaagt 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  32738306 attgaataccaaaaacaaatttcaactgagcttacaatctcttgacaagggtcctgttcctccctcagggccatctggctgcacctttatccccggaagt 32738207  T
Q  117 ggtggcccagtctgccctc 135  Q
    |||||| ||  ||||||||    
T  32738206 ggtggcacaaactgccctc 32738188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 23432178 - 23432079
Alignment:
Q  233 tttacttcgacactcctacgatcggtgtccgacact-atataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagttttctctc 331  Q
    |||| |||| |||||||| || |||||||||||||| |||||||||| || ||||||||||| ||||||||||  ||||||||| ||||  |||||||||    
T  23432178 tttaattcggcactcctaggaccggtgtccgacacttatataacactcatacgagccgtgtcggacaactcagataaatatctagaacattttttctctc 23432079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 16789266 - 16789332
Alignment:
Q  55 ctcttgacaagggtcctgttcctccttcagggccttctggctgcacctttatccccggaagtggtgg 121  Q
    ||||||| |||||||||||  |||| || || ||||||||||| || |||||||| |||||||||||    
T  16789266 ctcttgataagggtcctgtggctccatctggaccttctggctgtacatttatcccaggaagtggtgg 16789332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 3388009 - 3387980
Alignment:
Q  176 actcctatgacactcgtacgacacgtgtcg 205  Q
    ||||||||||||||||||||||||||||||    
T  3388009 actcctatgacactcgtacgacacgtgtcg 3387980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 23636348 - 23636311
Alignment:
Q  168 tgtctgacactcctatgacactcgtacgacacgtgtcg 205  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  23636348 tgtccgacactcctatgacactcgtaagacacgtgtcg 23636311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 167 - 332
Target Start/End: Complemental strand, 19294705 - 19294537
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||| |||  ||||||||||||||| ||||||||||||||||    
T  19294705 gtgtccgacactcctgtgacacccgtacgacacgtgtcgaaccggtgtccaaaataattgtttttttctttacttcgacactcttacgatcggtgtccga 19294606  T
Q  265 ca-ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagttttctctct 332  Q
    || || ||||||||| || ||||||||||| ||||| |||  |||||||||||||||| ||||||||||    
T  19294605 cacctgtataacactcatacgagccgtgtcggacaagtcacacaaatatctaaaacaatttttctctct 19294537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 299
Target Start/End: Complemental strand, 34013857 - 34013722
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |||  |||||||||||||||||||||| |||||||||    
T  34013857 gtgtccgacactccaatgacacttgtacgacacgtgtcgaaccggtgtcctaaataattgtttttttctttacttcgacactcctacgattggtgtccga 34013758  T
Q  265 ca-ctatataacacttatgcgagccgtgtcagacaa 299  Q
    || |||||||||||| || |||||||||||||||||    
T  34013757 cacctatataacactcatacgagccgtgtcagacaa 34013722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 14494230 - 14494382
Alignment:
Q  173 gacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt---tttacttcgacactcctacgatcggtgtccgaca-ct 268  Q
    |||||||||||||||| |||||||||||||||||||| | ||| |||||||||||| |||   ||||||||||||||||||| |||||||||||||| ||    
T  14494230 gacactcctatgacacccgtacgacacgtgtcgaaccagtgtcttaaataattgttttttttctttacttcgacactcctacaatcggtgtccgacacct 14494329  T
Q  269 atataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaa 321  Q
    |||||||||| || ||||||||||| |||||||||  ||||||||| ||||||    
T  14494330 atataacactaatacgagccgtgtcggacaactcacacaaatatcttaaacaa 14494382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 167 - 299
Target Start/End: Original strand, 34010993 - 34011128
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| |||||||| |||||||| || |||||||||||||||||| |||||||||||||||| |||  |||||||||||||||||||||| |||||||||    
T  34010993 gtgtccgacactccaatgacacttgtgcgacacgtgtcgaaccggtgtcctaaataattgtttttttctttacttcgacactcctacgattggtgtccga 34011092  T
Q  265 ca-ctatataacacttatgcgagccgtgtcagacaa 299  Q
    || |||||||||||| || |||||||||||||||||    
T  34011093 cacctatataacactcatacgagccgtgtcagacaa 34011128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 167 - 321
Target Start/End: Complemental strand, 12844280 - 12844123
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattg--ttattttttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| ||||||||||| ||||  ||||||||||||||||||||| ||||||||||||||  || || |||||||||||||||||| ||||| |||| ||    
T  12844280 gtgtccgacactcctataacacctgtacgacacgtgtcgaaccggtgtcctaaataattggttttttctttacttcgacactcctaagatcgatgtctga 12844181  T
Q  265 cac-tatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaa 321  Q
    ||| ||||||||||| || ||||| |||||||||||||||  || |||||||||||||    
T  12844180 cacttatataacactcatacgagctgtgtcagacaactcacacagatatctaaaacaa 12844123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 332
Target Start/End: Complemental strand, 17540390 - 17540225
Alignment:
Q  167 gtgtctgacactcctatgacact-cgtacgacacgtgtcgaaccggcgtcctaaataattgttattttttacttcgacactcctacgatcggtgtccgac 265  Q
    ||||| ||||||||||||||||  ||||| ||||| |||||||||| |||| ||||||| ||| || ||||||| ||| ||||| |||||||| || |||    
T  17540390 gtgtccgacactcctatgacaccgcgtacaacacgagtcgaaccggtgtcc-aaataat-gtttttctttactttgactctccttcgatcggtatctgac 17540293  T
Q  266 ac-tatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagttttctctct 332  Q
    || ||||||||||| ||  || ||||||| |||||||||| |||||||||||||||| |||| |||||    
T  17540292 acctatataacactcatatgaaccgtgtcggacaactcagacaaatatctaaaacaatttttttctct 17540225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 31414785 - 31414691
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt-tttacttcgacactcctacgatcggtgtc 261  Q
    ||||| || |||||||| ||||||||||  || ||||| ||| |  |||||||||||||||| ||| |||||||| ||||||||||||||||||||    
T  31414785 gtgtccgatactcctatcacactcgtacaccatgtgtcaaactgatgtcctaaataattgttttttctttacttc-acactcctacgatcggtgtc 31414691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 57302 - 57220
Alignment:
Q  236 acttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaa 317  Q
    ||||||||| ||||| ||||| |||| ||||| ||| ||||||| || ||||||||||| ||||||| ||  |||||||||||    
T  57302 acttcgacattcctaggatcgatgtctgacacctatgtaacactcatacgagccgtgtcggacaactaagataaatatctaaa 57220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 167 - 326
Target Start/End: Complemental strand, 54305996 - 54305833
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt---tttacttcgacactcctacgatcggtgtccg 263  Q
    ||||| |||||||||||||||| |||||||||||||||||||||  |||||||||||||||| |||   ||||||||||||||||||| ||||||||||     
T  54305996 gtgtccgacactcctatgacacccgtacgacacgtgtcgaaccgatgtcctaaataattgttttttgtctttacttcgacactcctacaatcggtgtcca 54305897  T
Q  264 aca-ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagtttt 326  Q
    ||| ||||| |||||| || |||||||||||||||||||||  |||||||||||||||| ||||    
T  54305896 acacctatacaacactcatacgagccgtgtcagacaactcacacaaatatctaaaacaattttt 54305833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 332
Target Start/End: Original strand, 40288940 - 40289108
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataat--tgttattttttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| |||| |||||| |||||||||||| |||||||||||||| || |||||||||  |||| || ||||||||||||||||||||||||||||||||    
T  40288940 gtgtccgacattcctataacactcgtacgatacgtgtcgaaccggtgttctaaataattgtgtttttctttacttcgacactcctacgatcggtgtccga 40289039  T
Q  265 ca-ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagttttctctct 332  Q
    || |||||||||||| || |||| | |||| |||||||||  |||||||||||||||  ||||||||||    
T  40289040 cacctatataacactcatacgagtcatgtcggacaactcaaacaaatatctaaaacattttttctctct 40289108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 174 - 326
Target Start/End: Original strand, 45612230 - 45612385
Alignment:
Q  174 acactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtccgaca-ctat 270  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||||||| ||||||||| || |    
T  45612230 acactcctatgacacccgtacgacacgtgtcaaaccggtgtcctaaataattgtttttttctttacgtcgacactcctacgatcgatgtccgacacctgt 45612329  T
Q  271 ataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagtttt 326  Q
    |||||||| || |||| |||||| |||||||||  |||||||||||||||| ||||    
T  45612330 ataacactcatacgagtcgtgtcggacaactcaaacaaatatctaaaacaattttt 45612385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 299
Target Start/End: Complemental strand, 55681057 - 55680921
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt---tttacttcgacactcctacgatcggtgtccg 263  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||| |||   |||||||||||||||||||||||||||||||    
T  55681057 gtgtccgacactcctatgacacttgtacgacacatgtcgaaccgctgtcctaaataattgttttttttctttacttcgacactcctacgatcggtgtccg 55680958  T
Q  264 aca-ctatataacacttatgcgagccgtgtcagacaa 299  Q
    ||| |||| ||||||| || ||||| |||||| ||||    
T  55680957 acacctatgtaacactcatacgagctgtgtcaaacaa 55680921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 3420171 - 3420075
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtc 261  Q
    ||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  3420171 gtgtctgacactcttatgacaatcgtacgacacgtgtcgaatcggtgtcctaaataattgtttttttctttacttcgacactcctacgatcggtgtc 3420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 320
Target Start/End: Complemental strand, 29988045 - 29987890
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttatttt--ttacttcgacactcctacgatcggtgtccga 264  Q
    |||| |||| |||||||||||  ||||| | | |||| ||| |||  || |||||||||||| ||||  |||||||||||||||||||||||||||| ||    
T  29988045 gtgtttgacgctcctatgacatccgtacaatatgtgttgaatcggtatcgtaaataattgtttttttctttacttcgacactcctacgatcggtgtctga 29987946  T
Q  265 cactatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaaca 320  Q
    | || ||||||||| || ||||  ||||  |||||||||  |||||||||||||||    
T  29987945 ccctgtataacactcatacgagatgtgttggacaactcaaacaaatatctaaaaca 29987890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 44508049 - 44508013
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgt 203  Q
    |||||||||||||||||||||||||||||||||||||    
T  44508049 gtgtctgacactcctatgacactcgtacgacacgtgt 44508013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 2641513 - 2641477
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgt 203  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  2641513 gtgtcggacactccaatgacactcgtacgacacgtgt 2641477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 7762794 - 7762826
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacac 199  Q
    ||||||||||||||||||||||||||| |||||    
T  7762794 gtgtctgacactcctatgacactcgtatgacac 7762826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 332
Target Start/End: Complemental strand, 26576439 - 26576271
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattg--ttattttttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||||||  || || ||||||| |||||||||||||||||| ||| |    
T  26576439 gtgtccgacactcctatgacacccgtacgacacgtgtcgaaccggtgtcttaaataattgattttttctttactttgacactcctacgatcggtctccaa 26576340  T
Q  265 ca-ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagttttctctct 332  Q
    || |||||||||||| || ||||||||||| |||||||||  ||||||| |||||||| |||| |||||    
T  26576339 cacctatataacactcatacgagccgtgtcggacaactcaaacaaatatttaaaacaaattttttctct 26576271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 167 - 326
Target Start/End: Complemental strand, 9930028 - 9929866
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| |||||||||||||||||||||||| ||||||| || ||| ||||||||| |||||| |||  |||||||| | | |||||||||||||||||||    
T  9930028 gtgtccgacactcctatgacactcgtacgaaacgtgtcaaaacggtgtcctaaatgattgtttttttctttacttcaagattcctacgatcggtgtccga 9929929  T
Q  265 ca-ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagtttt 326  Q
    || |||||||||||| || | |||||||||| ||||||| | ||||||||||||| |||||||    
T  9929928 cacctatataacactcataccagccgtgtcaaacaactctgacaaatatctaaaataagtttt 9929866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 168 - 332
Target Start/End: Original strand, 34409369 - 34409535
Alignment:
Q  168 tgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtccgac 265  Q
    |||| ||||||||||||| || ||||||||||||||| |||||| |||||||||||||||| |||  ||||||||||||| |||| ||||||||||||||    
T  34409369 tgtccgacactcctatgatacccgtacgacacgtgtcaaaccggtgtcctaaataattgtttttttctttacttcgacacgcctatgatcggtgtccgac 34409468  T
Q  266 a-ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagttttctctct 332  Q
    | |||||||||||| || ||||  ||||   ||||||||  ||| |||||||||||| ||||||||||    
T  34409469 acctatataacactcatacgagttgtgttgaacaactcaaacaactatctaaaacaa-ttttctctct 34409535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 32200654 - 32200789
Alignment:
Q  194 cgacacgtgtcgaaccggcgtcctaaataattgttatttt--ttacttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgt 290  Q
    ||||||||||||||| || |||||||||||||| | ||||  |||||||||||||||||||||||||| || |||| ||||||||| | || ||||||||    
T  32200654 cgacacgtgtcgaactggtgtcctaaataattgattttttctttacttcgacactcctacgatcggtgcccaacacctatataacagtcatacgagccgt 32200753  T
Q  291 gtcagacaactcaggcaaatatctaaaacaagtttt 326  Q
    ||| ||||||||||  ||||||||||||||| ||||    
T  32200754 gtcggacaactcagaaaaatatctaaaacaattttt 32200789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 315
Target Start/End: Complemental strand, 17651626 - 17651476
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttatttt--ttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| ||||||| ||||||||| |||| |||| ||||||||  | |||||||||| ||||| | ||  ||||||||||||||||  || ||||||||||    
T  17651626 gtgtccgacactcttatgacacttgtacaacac-tgtcgaacaagtgtcctaaatagttgttttcttctttacttcgacactcctttgaccggtgtccga 17651528  T
Q  265 cact-atataacacttatgcgagccgtgtcagacaactcaggcaaatatcta 315  Q
    |||| |||||||||||||  ||| |||||| ||||||| || ||||||||||    
T  17651527 cacttatataacacttatatgaggcgtgtcggacaacttagacaaatatcta 17651476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 326
Target Start/End: Complemental strand, 13039231 - 13039093
Alignment:
Q  190 cgtacgacacgtgtcgaaccggcgtcctaaataattgttatttt--ttacttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgag 286  Q
    |||||||||| |||||| |||| ||| |||||||||| | ||||  ||||||| ||| ||||||||| |||||||||||| | ||||||||| ||  |||    
T  13039231 cgtacgacacatgtcgatccggtgtcttaaataattgattttttctttacttctaca-tcctacgattggtgtccgacacatttataacactcatatgag 13039133  T
Q  287 ccgtgtcagacaactcaggcaaatatctaaaacaagtttt 326  Q
      |||||||||| ||||| |||||||||||||||| ||||    
T  13039132 ttgtgtcagacagctcagacaaatatctaaaacaattttt 13039093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 18724599 - 18724681
Alignment:
Q  233 tttacttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcagacaactcaggcaaatatct 314  Q
    |||||||||||||||||  || | ||||| ||||| |||||| ||||||   ||| ||||||||||||||||| |||||||||    
T  18724599 tttacttcgacactccttagaccagtgtctgacacctatatatcacttaaaagaggcgtgtcagacaactcagacaaatatct 18724681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 41849309 - 41849235
Alignment:
Q  230 ttttttacttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcagacaactca 303  Q
    ||||||| ||||||||||||  ||  |||||||||||| ||||||||||||||  ||| |||||| |||||||||    
T  41849309 ttttttatttcgacactccttggactggtgtccgacacctatataacacttatatgaggcgtgtcggacaactca 41849235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 22291185 - 22291047
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| |||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||| |||  |||||||||||||||||||||||||| |||||    
T  22291185 gtgtccgacactcctatgacacccgtaccacacgtgttgaaccggtgtcctaaataattgtttttttctttacttcgacactcctacgatcggtatccga 22291086  T
Q  265 cac-tatataacacttatgcgagccgtgtcagacaactc 302  Q
    ||| |||||| |||| || ||||||||||  ||||||||    
T  22291085 cacgtatataccactcatacgagccgtgtaggacaactc 22291047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 44572316 - 44572418
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactcctacgatcggtgtccga 264  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || || |||  |||||||||||||||||||||||||||| |||    
T  44572316 gtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaatacttatttttttctttacttcgacactcctacgatcggtgttcga 44572415  T
Q  265 cac 267  Q
    |||    
T  44572416 cac 44572418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 207 - 326
Target Start/End: Original strand, 45215847 - 45215969
Alignment:
Q  207 accggcgtcctaaataattgttatttt--ttacttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcagacaactca 303  Q
    ||||| |||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||| ||| ||||||| || ||||||||||| |||||| ||    
T  45215847 accggtgtcctaaataattgtttttttctttacttcgtcactcctacgatcggtgtccgacacctatgtaacactcatacgagccgtgtcggacaaccca 45215946  T
Q  304 ggcaaatatctaaaacaagtttt 326  Q
    | |||||||||||||||| ||||    
T  45215947 gtcaaatatctaaaacaattttt 45215969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 320
Target Start/End: Complemental strand, 27616701 - 27616534
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtc-ga--------accggcgtcctaaataa--ttg--ttattttttacttcgacactcctacga 253  Q
    ||||| ||||||| |||||||||||||||||||||||| ||        ||||| |||||||||||  |||  || || ||||| |||||||||||| ||    
T  27616701 gtgtccgacactcatatgacactcgtacgacacgtgtcagacaactaagaccggtgtcctaaataaatttgttttcttctttacatcgacactcctagga 27616602  T
Q  254 tcggtgtccgaca-ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaaca 320  Q
     ||||||||| || |||||| ||||| || | ||||||||| |||||||||| ||||||||| |||||    
T  27616601 acggtgtccggcacctatatgacactcatacaagccgtgtcggacaactcagacaaatatctgaaaca 27616534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 10678599 - 10678514
Alignment:
Q  233 tttacttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaa 317  Q
    |||| ||| ||||||||| ||  |||||||||||| ||||||||||| || ||| ||||||| |||||||||| ||||||| ||||    
T  10678599 tttaattcaacactcctaggactggtgtccgacacctatataacactcatacgaaccgtgtctgacaactcagacaaatatttaaa 10678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 37338654 - 37338719
Alignment:
Q  267 ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagttttctctct 332  Q
    |||||||| ||| || |||| |||| |||||||||||| ||||||||| |||||  ||||||||||    
T  37338654 ctatataatactcatacgagtcgtgacagacaactcagacaaatatctgaaacattttttctctct 37338719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 194 - 317
Target Start/End: Original strand, 15131778 - 15131905
Alignment:
Q  194 cgacacgtgtcgaaccggcgtcctaaataattgttattttt---tacttcgacactcctacgatcggtgtccgaca-ctatataacacttatgcgagccg 289  Q
    |||||||||||||||||| ||||| |||||||||| |||||   ||||||||||||||||||| |||||||||||| |||||||||||| ||  |||| |    
T  15131778 cgacacgtgtcgaaccggtgtcctgaataattgttttttttctttacttcgacactcctacgaccggtgtccgacacctatataacactcatatgagcag 15131877  T
Q  290 tgtcagacaactcaggcaaatatctaaa 317  Q
    ||||  ||||||||| ||||||||||||    
T  15131878 tgtcgaacaactcagacaaatatctaaa 15131905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 37855379 - 37855284
Alignment:
Q  173 gacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt-tttacttcgacactcctacgatcggtgtccgacac 267  Q
    ||||||||||||||| |||| ||||||||||| |||||  |||||||||||||||| ||| |||||||| ||||||||||||| |||| |||||||    
T  37855379 gacactcctatgacattcgtgcgacacgtgtcaaaccgttgtcctaaataattgttttttctttacttcaacactcctacgattggtgaccgacac 37855284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 18393356 - 18393408
Alignment:
Q  173 gacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataatt 225  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  18393356 gacactcctatgacactcgtacgacacgtgtcgaactagtgtcctaaataatt 18393408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 28421349 - 28421288
Alignment:
Q  233 tttacttcgacactcctacgatcggtgtccgaca-ctatataacacttatgcgagccgtgtc 293  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||| || ||||| |||||    
T  28421349 tttacttcgacattcctacgatcggtgtccgacacctatataacactcatacgagctgtgtc 28421288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 15850241 - 15850275
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgt 201  Q
    ||||| |||||||||||||||||||||||||||||    
T  15850241 gtgtccgacactcctatgacactcgtacgacacgt 15850275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 332
Target Start/End: Original strand, 10516026 - 10516121
Alignment:
Q  238 ttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaacaagttttctctct 332  Q
    ||||||||| ||| | |||||||||||||| | ||||| ||| || |||| |||||||||||||||| |||||||||||||| |  ||||||||||    
T  10516026 ttcgacacttctagggtcggtgtccgacacctgtataatactcatacgagtcgtgtcagacaactcatgcaaatatctaaaatattttttctctct 10516121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 30121117 - 30121035
Alignment:
Q  170 tctgacactcctatgacactcgtacgacacgtgtcgaaccggcgtcctaaataattgttattt--tttacttcgacactccta 250  Q
    |||||||||||||||| || |||||||||||||||| | ||  |||||||||||||||| |||  |||||||| |||||||||    
T  30121117 tctgacactcctatgatacccgtacgacacgtgtcggatcgatgtcctaaataattgttttttgctttacttccacactccta 30121035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 26565573 - 26565520
Alignment:
Q  267 ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaaca 320  Q
    |||||||||||| || ||||||||||| |||||||||| |||||||||||||||    
T  26565573 ctatataacactcatacgagccgtgtcggacaactcagacaaatatctaaaaca 26565520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 11410985 - 11410903
Alignment:
Q  238 ttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaaca 320  Q
    ||||||||||||| || ||||||| ||||| ||||||||||| || |||||| |||||||||||| | ||||||||| ||||||    
T  11410985 ttcgacactcctaggaccggtgtc-gacacctatataacactcatacgagccatgtcagacaacttatgcaaatatcgaaaaca 11410903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 25092165 - 25092203
Alignment:
Q  167 gtgtctgacactcctatgacactcgtacgacacgtgtcg 205  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  25092165 gtgtctgacacttctatgacactcgtacaacacgtgtcg 25092203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 10657329 - 10657378
Alignment:
Q  269 atataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaa 318  Q
    |||||||||| || |||||||||||||||||||||   ||||||||||||    
T  10657329 atataacactcatacgagccgtgtcagacaactcatataaatatctaaaa 10657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 43921801 - 43921883
Alignment:
Q  233 tttacttcgacactcctacgatcggtgtccgacactatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaa 317  Q
    |||| ||| ||||||||| || |||||||||||||  ||||||||| || ||| |||| || |||||||||| ||||||||||||    
T  43921801 tttaattcaacactcctaggaccggtgtccgacac-ctataacactcat-cgaaccgtttcggacaactcagacaaatatctaaa 43921883  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 40838204 - 40838121
Alignment:
Q  238 ttcgacactcctacgatcggtgtccgaca-ctatataacacttatgcgagccgtgtcagacaactcaggcaaatatctaaaaca 320  Q
    |||||||||| |  || |||||||||||| |||||||||||| || | || |||||| |||||||||| ||||| |||||||||    
T  40838204 ttcgacactctttggaccggtgtccgacatctatataacactcatacaagtcgtgtcggacaactcagacaaatgtctaaaaca 40838121  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 32676422 - 32676459
Alignment:
Q  166 cgtgtctgacactcctatgacactcgtacgacacgtgt 203  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  32676422 cgtgtccgacactcctatgacacttgtacgacacgtgt 32676459  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 38989145 - 38989201
Alignment:
Q  266 actatataacacttatgcgagccgtgtcagac-aactcaggcaaatatctaaaacaa 321  Q
    ||||||||||||| || ||||||||||| ||| ||||||| |||||||||| |||||    
T  38989145 actatataacactcatacgagccgtgtcggacaaactcagacaaatatctagaacaa 38989201  T

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