View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_7 (Length: 677)
Name: NF18674_low_7
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 21 - 666
Target Start/End: Original strand, 34908422 - 34909067
Alignment:
| Q |
21 |
attcctatagaacaatgacaactggttttgtaaaaagcatgacaggttgggaagtaaatcccaaccattaactacattgtatcttggatcataaacacac |
120 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34908422 |
attcctatagaacaatgacaactggttttgtaaacagcatgacaggttgggaagtaaatcccaaccattaactacattatatcttggatcataaacacac |
34908521 |
T |
|
| Q |
121 |
tgtgatctttaacggnnnnnnnnnnnnnnnnnnnnnnngcattatcaaaactactcaccgctgtttgaccaaaacctgtcggatcattacatgagagtga |
220 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34908522 |
tgtgatctttaacggaaaaaaaaaattaaaagtgaaaagcattatcaaaattactcaccgctgtttgaccaaaacctgttggatcattacatgagagtga |
34908621 |
T |
|
| Q |
221 |
tgcaccgcttgagtaaatgtttccaacaagcccagatggaggtgaactgaacaagcttgattgacttaaagcagcagtctgcccaatgggagcggtattc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908622 |
tgcaccgcttgagtaaatgtttccaacaagcccagatggaggtgaactgaacaagcttgattgacttaaagcagcagtctgcccaatgggagcggtattc |
34908721 |
T |
|
| Q |
321 |
tgaccgaaatcagaagcagactgtgcatttgtaggggctgcagagctaaataattgggatggttgagtgttgcgaaaactgcttgtgaaaaatggtgaag |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34908722 |
tgaccgaaatcagaagcagactgtgcatttgtaggggctgcagagctaaataattgggatggttgagtgttgcgaaaactgcttgtgaaaaatggtgcag |
34908821 |
T |
|
| Q |
421 |
atgtacctggagcagcagtattaaacagggatgcagatggtctaaatgcctgcgacaaagaattgtcaccaaacagaggtgtggatgagggaaaagtaga |
520 |
Q |
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| T |
34908822 |
atgtacctcgagcagcagtattaaacagggatgcagatggtctaaatgcctgcgacgaagaattgtcaccaaacagaggtgtggatgagggaaaagtaga |
34908921 |
T |
|
| Q |
521 |
aggtgctgctgctgatgttgataaaccaaaagccgatgaactgaaggcaggagctgatgttccaaatccagaagaaaatgtagaagtattcagtacaaat |
620 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34908922 |
aggtgctgctgctgatgtcgataaaccaaaagccgatgaactgaaggcaggagctgatgttccaaatccagaagaaaatgtagaagtattcggtacaaat |
34909021 |
T |
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| Q |
621 |
gggtaagaattaggtgttgtgctattggaaagattggatgatgatg |
666 |
Q |
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| T |
34909022 |
gggtaagaattaggtgttgtgctattggaaagattggatgatgatg |
34909067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 34894702 - 34894756
Alignment:
| Q |
168 |
aaactactcaccgctgtttgaccaaaacctgtcggatcattacatgagagtgatg |
222 |
Q |
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|||||||||||||||| ||| ||||||||||||||| ||||| ||| |||||||| |
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| T |
34894702 |
aaactactcaccgctgcttgtccaaaacctgtcggagcattagatgtgagtgatg |
34894756 |
T |
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