View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_71 (Length: 320)
Name: NF18674_low_71
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 9874133 - 9874413
Alignment:
| Q |
24 |
tttcacaaagtgtgatcttcagtacctctcatataataatttaacaaatacataaataatttgtatatataaatgcatctgtgtataagtgattgtatgt |
123 |
Q |
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| T |
9874133 |
tttcacaaagtgtaatcttcagtacctatcataaaataatataacaaatacataaataatttgtatatgtaaatgcatgtgtgtataagtgattgtaggt |
9874232 |
T |
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| Q |
124 |
gtaattgaatctggaattatttgaagtttataaataccggtatcttcttttcagcttacttaatcaaagcttcaaagttattcatctacaattgtattga |
223 |
Q |
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| T |
9874233 |
gtaattgaatctggaattattttaagtttataaataccggtatatccttttcagcttacttaatcaaagcttcaaagtcattcatctacaattgtattga |
9874332 |
T |
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| Q |
224 |
ttatatgtttacaattgcaaaactggtacgtcccatgattgagattatgatatgaacccctcatcatatataaaatgaagc |
304 |
Q |
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| T |
9874333 |
ttatatgtttacaattgcaaaacaggtacgtcccatgattgagattatgatatgaacccctcatcatatatgaaatgaagc |
9874413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 9866373 - 9866263
Alignment:
| Q |
194 |
ttcaaagttattcatctacaattgtattgattatatgtttacaattgcaaaactggtacgtcccatgattgagattatgatatgaacccctcatcatata |
293 |
Q |
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| T |
9866373 |
ttcaaagttattcatctacaattgtattgattatatgtttacaattgcaaaacaggtacgtcccatgattgagattatgatatgaacccctcatcatata |
9866274 |
T |
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| Q |
294 |
taaaatgaagc |
304 |
Q |
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| T |
9866273 |
tgaaatgaagc |
9866263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 9886106 - 9886201
Alignment:
| Q |
56 |
ataataatttaacaaatacataaataatttgtatatataaatgcatctgtgtataagtgattgtatgtgtaattgaatctggaattatttgaagtttata |
155 |
Q |
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| T |
9886106 |
ataataatggaacaaatacataaataat----atatttaaatgtatgtgtgtatacgtgaatgtatgtgtaagtgaatctggaattattttaagtctata |
9886201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 9873080 - 9873158
Alignment:
| Q |
58 |
aataatttaacaaatacataaataatttgtatatataaatgcatctgtgtataagtgattgtatgtgtaattgaatctg |
136 |
Q |
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| T |
9873080 |
aataatgttacaaatacataaataatccgtatatgtaaatgtatgtgtgtaaaagtgaatgtatgtgtaagtgaatctg |
9873158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 9874012 - 9874062
Alignment:
| Q |
194 |
ttcaaagttattcatctacaattgtattgattatatgtttacaattgcaaaa |
245 |
Q |
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| T |
9874012 |
ttcaaagttattcatcaacaatt-tattcattatatgtttacaattgcaaaa |
9874062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 9872533 - 9872468
Alignment:
| Q |
56 |
ataataatttaacaaatacataaataatttgtatatataaatgcatctgtgtataagtgattgtat |
121 |
Q |
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| T |
9872533 |
ataataatgtgacaaatacataaataattagtataaattaatgtatatgtttataagtgaatgtat |
9872468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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