View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_72 (Length: 310)
Name: NF18674_low_72
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 46 - 297
Target Start/End: Complemental strand, 33562414 - 33562163
Alignment:
| Q |
46 |
aattgattggcgatcttcaatttccaaactaatttgttgattcataaacttagaaacctactggtcaaaactctacaatttgaagattcaaaatagtaat |
145 |
Q |
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| T |
33562414 |
aattgattggcgatcttcaatttccaaactaatttgttgattcataaacttagaaacctactggtcaaaactctacaatttgaagattcaaaatggtaat |
33562315 |
T |
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| Q |
146 |
caatcataaaatattacacggaataactcacttgattagtgaaaccaattccaaagccgagaagtattcgaccaataatgagcatagtaatattttgagc |
245 |
Q |
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| T |
33562314 |
caatcataaaatattacacggaataactcacttgattagtgaaaccaattccaaagccgagaagtattcgaccaataatgagcatagtaatattttgagc |
33562215 |
T |
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| Q |
246 |
acctccagtaatggcactacccacaagaaagatgataccccccaacatgatg |
297 |
Q |
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| T |
33562214 |
acctccagtaatggcactacccacaagaaagatgataccccccaacatgatg |
33562163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33562479 - 33562426
Alignment:
| Q |
1 |
attctatcaataattagatatcatgacgtccagtttcatcaattgaattgattg |
54 |
Q |
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| T |
33562479 |
attctatcaataattagatatcatgacatccagtttcatcaattgaattgattg |
33562426 |
T |
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