View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_73 (Length: 306)
Name: NF18674_low_73
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 157 - 289
Target Start/End: Complemental strand, 43100989 - 43100858
Alignment:
| Q |
157 |
gaatacaatcccccaccaatttctatattttgatctaatgatgcaatttatagattggataactatagccttttatcatataaggtatagccttttatca |
256 |
Q |
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| T |
43100989 |
gaatacaatcccc-accaatttctatattttgatctaatgatgcaatttatagattggataactatagccttttatcatataaggtatagcctttcatca |
43100891 |
T |
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| Q |
257 |
gacaccccctccggttactattataagcaaaaa |
289 |
Q |
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| T |
43100890 |
gatatcccctccagttactattataagcaaaaa |
43100858 |
T |
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Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 43101173 - 43101027
Alignment:
| Q |
10 |
ataatactagaccaacaatgcatacatactcgatgcaaatcaaataatttgttcaaatnnnnnnnnnntacacaacaatcctatcatatatttcaacaat |
109 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43101173 |
ataatactagacaaaaaatgcatacatactcgatgcaaatcaaataatttgttcaaataaaaaaaaa-tacacaacaatcctatcatatatttcaacaat |
43101075 |
T |
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| Q |
110 |
ttcactttgttcattaatgcatcaattttgtcttccacacttcttcgg |
157 |
Q |
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| T |
43101074 |
ttcactttgttcattaatgcatcaattttgtcttccacacttcttcgg |
43101027 |
T |
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