View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_75 (Length: 296)
Name: NF18674_low_75
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 20817099 - 20817375
Alignment:
| Q |
1 |
agcaagtggtcacacacatccatcaacataccaacgttcacattgagatagaaaggaggtgttaaacaatttgttaggttaggtgtctttcatatccttc |
100 |
Q |
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| T |
20817099 |
agcaagtggtcacacacatccatcaacataccaacgttcacattgagatagaaaggaggtgttaaacaatttgttaggttaggtgtctttcatatccttc |
20817198 |
T |
|
| Q |
101 |
ctttctttatctatcaaattcaaatctgatctttatgttagggtcacctctatatgaaacatcttaattttgaacaagactccaattgacataggtccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817199 |
ctttctttatctatcaaattcaaatctgatctttatgttagggtcacctctatatgaaacatcttaattttgaacaagactccaattgacataggtccaa |
20817298 |
T |
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| Q |
201 |
tctacaaggctatcaaagaattaattataagtggatgaaatgaaatgaaacattgcctttactcttaagacaccaat |
277 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817299 |
tccacaaggctatcaaagaattaattataagtggatgaaatgaaatgaaacattgcctttactcttaagacaccaat |
20817375 |
T |
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