View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_76 (Length: 292)
Name: NF18674_low_76
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_76 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 37162687 - 37162429
Alignment:
| Q |
16 |
ctcgcgatgtaaagcaatgctgtatttttatatggcattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattg |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37162687 |
ctcgcgatgtatagcaatgctgtatttttatatggcattattaacttctgactgcccatacaagagtggagtaatgttgcaaaatagtggattttgattg |
37162588 |
T |
|
| Q |
116 |
gatattagtgtaaaactgttttcttctgacggtgtatattcttcaaatcctagaaatttaatcaacttgtactaaaagtttaaaattatcatcagtttta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37162587 |
gatattagtgtaaaactgttttcttctgacggtgtatattcttcaaatcctagaaatttaatcaacttgtactaaaagtttaaaattatcatcagtttta |
37162488 |
T |
|
| Q |
216 |
tttaggttaaggcaagtcatgataaatttaaaaatgaaatttattaactattcattttg |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37162487 |
tttaggttaaggcaagtcatgataaattttaaaatgaaatttattaactattcattttg |
37162429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 596529 - 596416
Alignment:
| Q |
51 |
cattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaactgttttcttctgacggtgt |
150 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||| || |||| |||||||||| ||||||||||| || |||||||||||||| ||| |||||||| |
|
|
| T |
596529 |
cattattaacttgtaactacccatacaagagtggggttatgtggcaaaatagttgattttgattgaatgttagtgtaaaactggttttaattgacggtgg |
596430 |
T |
|
| Q |
151 |
atattcttcaaatc |
164 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
596429 |
atattctttaaatc |
596416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 49250276 - 49250327
Alignment:
| Q |
80 |
agtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaac |
131 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
49250276 |
agtggggtgatgttgcaaaatagtggattttcattggatgttaatgtaaaac |
49250327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 17511398 - 17511349
Alignment:
| Q |
89 |
atgttgcaaaatagtggattttgattggatattagtgtaaaactgttttc |
138 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
17511398 |
atgtggcaaagtagtggattttcattggatgtcagtgtaaaactgttttc |
17511349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University