View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_79 (Length: 283)
Name: NF18674_low_79
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 36192022 - 36192167
Alignment:
| Q |
18 |
ttatcaccttttgagaagatattatgttttccagctgcaactaataactatgattgaatgaatgtaggggacggaaacaataatttcatgcaatagttta |
117 |
Q |
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| T |
36192022 |
ttatcaccttttgagaagatattatgttttccagctgcgactaataactatgattgaa----tgtaggggacggaaacaataatttcatgcaatagttta |
36192117 |
T |
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| Q |
118 |
aacctcattattacacaagttacctgaaatacgtcagatgccttgacaaa |
167 |
Q |
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| T |
36192118 |
aacctcattattacacaagttacctgaaatacgtcaggtgccttgacaaa |
36192167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 36192232 - 36192286
Alignment:
| Q |
165 |
aaagtagcaagataattggtgaggaacttgaaagtatcctttgacatgctgagat |
219 |
Q |
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| T |
36192232 |
aaagtagcaagataattggtgaggaacttaaaagaatcctttgacatgctgagat |
36192286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 5055467 - 5055325
Alignment:
| Q |
21 |
tcaccttttgagaagatattatgttttccagctgcaactaataactatgattgaatgaatgtaggggacggaaacaataatttcatgcaatagtttaaac |
120 |
Q |
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| T |
5055467 |
tcaccttttgagaagatattatgttttccagctgcgactaataactatgattgaatg----taggggacggaaacaataatttcatgcaatagtttaaac |
5055372 |
T |
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| Q |
121 |
ctcattattacacaagttacctgaaatacgtcagatgccttgacaaa |
167 |
Q |
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| T |
5055371 |
ctcaatattacacaagttacctgaaatacgtcaggtgccttgacaaa |
5055325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 5055260 - 5055206
Alignment:
| Q |
165 |
aaagtagcaagataattggtgaggaacttgaaagtatcctttgacatgctgagat |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
5055260 |
aaagtagcaagataattggtgaggaacttgaaagaatcctttgacaagctgagat |
5055206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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