View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_86 (Length: 255)
Name: NF18674_low_86
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 19202949 - 19203169
Alignment:
| Q |
13 |
ataattctacatctaattataacactctagttctaacaacagataaccaaatatcacctttgaaagactggttcttctgtataggtattttcctatccct |
112 |
Q |
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| T |
19202949 |
ataattctacatctaattataacactctagttctaacaacagataaccaaatatcacctttgaaagactggttcttctgtataggtattttcctatccct |
19203048 |
T |
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| Q |
113 |
tgtggcgccaagatcagatttgttctcctccgtaccagtaagttgtaccctaacaaaattgttcatgtaaagtttgtaaaccaatgaatattatgagcat |
212 |
Q |
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| T |
19203049 |
tgtggcgccaagatcagatttgttctcctccgtaccagtaagttgtaccctaacaaaattgttcatgtaaagtttgtaaaccaatgaatattatgagcat |
19203148 |
T |
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| Q |
213 |
ctttagttctaattttgtata |
233 |
Q |
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||||||||||||||||||||| |
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| T |
19203149 |
ctttagttctaattttgtata |
19203169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 19199099 - 19199238
Alignment:
| Q |
56 |
taaccaaatatcacctttgaaagactggttcttctgtataggtattttcctatcccttgtggcgccaagatcagatttgttctcctccgtaccagtaagt |
155 |
Q |
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|||||||| || ||||||||||||||| | ||||| ||||||||||||| |||||||||||| |||| ||||| ||||||||||||| ||||||||||| |
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| T |
19199099 |
taaccaaacattacctttgaaagactgagttttctgcataggtattttccgatcccttgtggcaccaaaatcagctttgttctcctccttaccagtaagt |
19199198 |
T |
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| Q |
156 |
tgtaccctaacaaaattgttcatgtaaagtttgtaaacca |
195 |
Q |
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| T |
19199199 |
tgtaccctaacagaattgttcatgtaaagtttgtaaacca |
19199238 |
T |
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