View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_88 (Length: 252)
Name: NF18674_low_88
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_88 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 41042287 - 41042046
Alignment:
| Q |
12 |
agagatggtgatggaaccttcattattaatcttagatgagcctacaactggtttggacagtgcatcttctagtttacttcttaaagcgcttcgtcgtgaa |
111 |
Q |
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| T |
41042287 |
agagatggtgatggaaccttcattattaatcttagatgagcctacaactggtttggacagcgcatcttctagtttacttcttaaagcgcttcgtcgtgaa |
41042188 |
T |
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| Q |
112 |
gctcttgaaggtgtaaacatatgcatggtacttcaccaaccaaggtaatatgctttttcctccaccttcattgtattgatgaaacattctaagctgtatt |
211 |
Q |
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| T |
41042187 |
gctcttgaaggtgtaaacatatgcatggtacttcaccaaccaaggtaatatgctttttcctccaccttcattgtattgatgaaacattctaagctgtatt |
41042088 |
T |
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| Q |
212 |
-ttttgaaaaagcattctaagctatatattatataccgtcat |
252 |
Q |
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| T |
41042087 |
tttttgaaaaagcattctaagctatatattatatactgtcat |
41042046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 28088454 - 28088601
Alignment:
| Q |
13 |
gagatggtgatggaaccttcattattaatcttagatgagcctacaactggtttggacagtgcatcttctagtttacttcttaaagcgcttcgtcgtgaag |
112 |
Q |
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|||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| || ||||| ||||||||||||| |
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| T |
28088454 |
gagatggttatggagccttcattgttaatcttagatgagcctacaactggtctggacagtgcatcttcctctttactgctgaaagcacttcgtcgtgaag |
28088553 |
T |
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| Q |
113 |
ctcttgaaggtgtaaacatatgcatggtacttcaccaaccaaggtaat |
160 |
Q |
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| T |
28088554 |
ctgctgaaggggtaaatgtttgcatggtacttcatcaaccaaggtaat |
28088601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 21493007 - 21493150
Alignment:
| Q |
16 |
atggtgatggaaccttcattattaatcttagatgagcctacaactggtttggacagtgcatcttctagtttacttcttaaagcgcttcgtcgtgaagctc |
115 |
Q |
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||||| ||||||||||| | |||| || ||||| |||||| | |||||||||||| |||||||| |||||||||| ||| ||| | || || |||| |
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| T |
21493007 |
atggttatggaaccttcccttctaattttggatgaacctacatccggtttggacagttcatcttctcagttacttcttagagcacttagacgcgaggctc |
21493106 |
T |
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| Q |
116 |
ttgaaggtgtaaacatatgcatggtacttcaccaaccaaggtaa |
159 |
Q |
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| T |
21493107 |
ttgaaggagtaaacatatgcatggtccttcaccaaccgaggtaa |
21493150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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