View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18674_low_9 (Length: 654)
Name: NF18674_low_9
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_9 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 16 - 654
Target Start/End: Original strand, 819651 - 820288
Alignment:
| Q |
16 |
tatatattaagattcaataatcaccaccaccttgtttctctctactagcaaattgtttgttttgttccaaatccattttattattactactagagtattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
819651 |
tatatattaagattcaataatcaccaccaccttgtttctctctactagcaaattgtttgttttgttccaaatccattttattattactactagagtattt |
819750 |
T |
|
| Q |
116 |
gtggtggtgttctctggattagttttaaagtaaaaattcattgtttagatgactagttttaaaaatctgatttgatttaacttaattgtgcttatctttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
819751 |
gtggtggtgttctctggattagttttaaagtaaaaattcattgtttagatgactagttttaaaaatctgatttgatttaacttaattgtgcttatctttg |
819850 |
T |
|
| Q |
216 |
ttgaacttgtgtgtattttttggctatatcttctctgacacattttgtgttaggtagatagtccgctggtagtaatatatctcattttgatttctttnnn |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
819851 |
ttgaacttgtgtgtattttttggctatatcttctctgacatattttgtgttaggtagatagtccgctggtagtaatatatctcattttgatttctttaaa |
819950 |
T |
|
| Q |
316 |
nnnntgtcgtttattagttgtgaaataatgttnnnnnnntaggtatattttgatgacttttctcaatatttaatgatgttctttatttctctcttacccn |
415 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
819951 |
aaaatgtcgtttattagttgtgaaataatgttaaaaaaataggtatattttgatgacttttctcaatatttaatgatgttctttatttctctcttaccct |
820050 |
T |
|
| Q |
416 |
nnnnnnnnctctcaccagtaatcaagaaaatgaagtggctgaaatcactcatttctcgattgaagaaggtttggaagaagaagcattcaacccaaatcaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820051 |
tttttttt-tctcaccagtaatcaagaaaatgaagtggctgaaatcactcatttctcgattgaagaaggtttggaagaagaagcattcaacccaaatcaa |
820149 |
T |
|
| Q |
516 |
gagtatgttccatgatactttccataccctacaacatgtagttttattttcttctaatgcatgttatttttcacaaaaatgcatgcatcctcatgtaggg |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
820150 |
gagtatgttccatgatactttccataccctacaacatgtagttttattttcttctaatgaatgttatttttcacaaaaatgcatgcatcctcatgtacgg |
820249 |
T |
|
| Q |
616 |
atatcaaatttgcatcagtatgtatgagtttcctaggag |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820250 |
atatcaaatttgcatcagtatgtatgagtttcctaggag |
820288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 840236 - 840331
Alignment:
| Q |
442 |
aaaatgaagtggctgaaatcactcatttctcgattgaagaaggtttggaagaagaagcattcaacccaaatcaagagtatgttccatgatactttc |
537 |
Q |
| |
|
||||||||||||||| || ||| ||||||||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
840236 |
aaaatgaagtggctgcaaatgctcttttctcgattgaagaagtttttgtcgaagaagcattcaactaaaaataagagtatgttccatgatactttc |
840331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 545
Target Start/End: Original strand, 810998 - 811074
Alignment:
| Q |
469 |
tctcgattgaagaaggtttggaagaagaagcattcaacccaaatcaagagtatgttccatgatactttccataccct |
545 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||| |||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
810998 |
tctccattgaagaaggtttggttcaagttgcattcaactcaaaacaagagtatgttccatgacacttttcataccct |
811074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 9277795 - 9277702
Alignment:
| Q |
217 |
tgaacttgtg-tgtattttttggctatatcttctctgacacattttgtgttaggtagatagtccgctggtagtaatatatctcattttgatttctt |
311 |
Q |
| |
|
|||||||||| ||||| |||||||||| | |||| ||||||| ||||| | | |||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
9277795 |
tgaacttgtgatgtatcttttggctattt--tctccgacacatcttgtgctgagaagatagtctgctggtagtaatatattttattttgatttctt |
9277702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University