View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_92 (Length: 241)
Name: NF18674_low_92
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 2552186 - 2551979
Alignment:
| Q |
16 |
acaaaacaggtaaatttaactaggaagcaatttatcattacctgaataatgttcagtgatatggtgagtttcaacatcattaaggttttttagtttctca |
115 |
Q |
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| T |
2552186 |
acaaaacaggtaaatttaactaggaagcaatttatcattacctgaataatgttcagtgatatggtgagtttcaacatcattaaggtttttcagtttctca |
2552087 |
T |
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| Q |
116 |
ccacacttgtgacatatcaaaattgaaggaccatcatcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattatattcaacag |
215 |
Q |
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| T |
2552086 |
ccacacttgtgacatatcaaaattgaaggaccatcatcagaatccatctgaaccaacaaccttgttcgagatgagacattttcttcattataatcaacag |
2551987 |
T |
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| Q |
216 |
gattggtt |
223 |
Q |
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|||||||| |
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| T |
2551986 |
gattggtt |
2551979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 2562935 - 2562792
Alignment:
| Q |
63 |
aatgttcagtgatatggtgagtttcaacatcattaaggttttttagtttctcaccacacttgtgacatatcaaaattgaaggacca---tcatcagaatc |
159 |
Q |
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|||| |||||||||||||| | ||||||| || |||||||||||||||||||||| || |||| ||||||||| |||||||||| | || |||||||| |
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| T |
2562935 |
aatgctcagtgatatggtgtgcttcaacagcagtaaggttttttagtttctcaccgcatttgtaacatatcaatattgaaggacaacagtcctcagaatc |
2562836 |
T |
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| Q |
160 |
catctgaaccaacaaccttgttcgagatgagacattttcttcat |
203 |
Q |
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| T |
2562835 |
catctcaaccaacaaccttgttctagatgagacattttcctcat |
2562792 |
T |
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