View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_97 (Length: 231)
Name: NF18674_low_97
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_97 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 38153255 - 38153462
Alignment:
| Q |
2 |
gtattaaagtagaacatttatatcactatctcatttccaaagtaaaattctgatgttaattcatgtctatattacataatgctgagaatttagtgttttc |
101 |
Q |
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| T |
38153255 |
gtattaaagtagaacatttatatcactatctcatttccaaagtaaaattctgatgttaattcatgtctatattacataatgctgagaatttagtgttttc |
38153354 |
T |
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| Q |
102 |
acaatgcaaatttggggaatgcttgtcttttcaaacttatatagtaataagtttcattgattgctgcatgaatggtgttccaatcttggtcctagatatt |
201 |
Q |
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| T |
38153355 |
acaatgcaaatttggggaatgcttgtcttttcaaacttatatagtaataagtttcattgattgctgcatgaatggtgttccaatcttggtcctagatatt |
38153454 |
T |
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| Q |
202 |
gctgtagc |
209 |
Q |
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|||||||| |
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| T |
38153455 |
gctgtagc |
38153462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 38169099 - 38169223
Alignment:
| Q |
15 |
acatttatatcactatctcatttccaaagtaaaattctgatgttaattcatgtctatattacataatgctgagaatttagtgttttcacaatgcaaattt |
114 |
Q |
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| T |
38169099 |
acatttatatcactatatcactttgaatgtacaattctgaggtgaattcatgtctatgttacata-tgccgagaatttagtgttttgacaatgcaaattt |
38169197 |
T |
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| Q |
115 |
ggggaatgcttgtcttttcaaactta |
140 |
Q |
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|||||||| | |||||||||||||| |
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| T |
38169198 |
ggggaatgttcatcttttcaaactta |
38169223 |
T |
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