View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18674_low_99 (Length: 227)
Name: NF18674_low_99
Description: NF18674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18674_low_99 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38998362 - 38998136
Alignment:
| Q |
1 |
ttagaagaagaaaaagagtacttgcctcctttacaaccagctcctcttgagccatatccaaattctggaggaagcttcaatgtacgtttacctcctaaca |
100 |
Q |
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| T |
38998362 |
ttagaagaagaaaaagagtacttgcctcctttacaaccagctcctcttgagccatatccaaattctggaggaagcttcaatgtacgtttacctcctaaca |
38998263 |
T |
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| Q |
101 |
taagaaaagggtaaaaaatgtcacttcaacatgccatgatccatataacaaaatagaatttacagtgactgaaaaaacaagtacctgtaagcataggagg |
200 |
Q |
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| T |
38998262 |
taagaaaagggtaaaaaatgtcacttcaacatgtcatgatccataaaacaaaatagaatttacagtgactgaaaaaacaagtacctgtaagcataggagg |
38998163 |
T |
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| Q |
201 |
aattccatcatctcctaaaatgcctac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
38998162 |
aattccatcatctcctaaaatgcctac |
38998136 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 30437570 - 30437612
Alignment:
| Q |
66 |
tggaggaagcttcaatgtacgtttacctcctaacataagaaaa |
108 |
Q |
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| T |
30437570 |
tggaggaagcttcaatgtacgtttacctcttaatataaaaaaa |
30437612 |
T |
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