View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18675_high_2 (Length: 504)

Name: NF18675_high_2
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18675_high_2
NF18675_high_2
[»] chr7 (4 HSPs)
chr7 (48-490)||(48495438-48495876)
chr7 (6-48)||(48495905-48495947)
chr7 (141-214)||(39093252-39093324)
chr7 (164-223)||(28562076-28562135)
[»] chr4 (2 HSPs)
chr4 (159-231)||(43471219-43471291)
chr4 (189-229)||(38346742-38346782)
[»] chr1 (1 HSPs)
chr1 (186-228)||(51781614-51781656)
[»] chr8 (1 HSPs)
chr8 (175-236)||(29495322-29495382)
[»] chr2 (1 HSPs)
chr2 (168-212)||(39549220-39549264)


Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 48 - 490
Target Start/End: Complemental strand, 48495876 - 48495438
Alignment:
Q  48 cacatattcagattatctcagctggacttgttatagaatttgcattttagcttctaaatactgttacttcagtgggaatctatacccagatacaaaagtt 147  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48495876 cacatattcagattatctcagctggacttgttatagaattagcattttagcttctaaatactgttacttcagtgggaatctatacccagatacaaaagtt 48495777  T
Q  148 ttgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttcaaatttgatgtagtc 247  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48495776 ctgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttgaaatttgatgtagtc 48495677  T
Q  248 ctaattaagttaagttttaaatcaaatctaattcaagtcaagaacagttctatcaatcaacatgaaatatggttagtttcaagttgcttgcttgctccac 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  48495676 ctaattaagttaagttttaaatcaaatctaattcaagtcaagaacagttctatcaatcaacatgaaatatggttagtttcaagttgct----tgctccac 48495581  T
Q  348 tccttggctgctggccacccagatgtctatgacattttaaacatttcttagttttaacgtttgaatagttttgattggagtatgaatcagttctgccagg 447  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48495580 tccttggctgctggccactcagatgtctatgacattttaaacatttcttagttttaacgtttgaatagttttgattggagtatgaatcagttctgccagg 48495481  T
Q  448 aaaatgttccaatnnnnnnngatgaaaaatgtagttggatttg 490  Q
    |||||||||||||       |||||||||||||||||||||||    
T  48495480 aaaatgttccaataaaaaaagatgaaaaatgtagttggatttg 48495438  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 48495947 - 48495905
Alignment:
Q  6 gacatcatcatgcaagaaaaaggaacaagagcaagtgggttgc 48  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48495947 gacatcatcatgcaagaaaaaggaacaagagcaagtgggttgc 48495905  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 39093324 - 39093252
Alignment:
Q  141 aaaagttttgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaattta 214  Q
    |||| ||| ||| |||| |||||||||| |||||||||| |||| || |||||| |||||||||||||||||||    
T  39093324 aaaattttagccttcatttaaactcttttatttacaattttatcatt-tttaccaaatcaaataattgaattta 39093252  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 28562076 - 28562135
Alignment:
Q  164 tctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaatt 223  Q
    ||||| |||||||| | || ||||||||||||||| ||||||||||||| | ||||||||    
T  28562076 tcttttatttacaaatttacccttctttacctaattaaataattgaattcaatcctaatt 28562135  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 43471219 - 43471291
Alignment:
Q  159 taaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaattt 231  Q
    ||||||| || |||||||||||||| |||||||| ||||||||||| ||||||||| || |||||||||||||    
T  43471219 taaactcatttatttacaattctatacttctttatctaatcaaatatttgaatttaatcataattttaaattt 43471291  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 38346742 - 38346782
Alignment:
Q  189 tttacctaatcaaataattgaatttagtcctaattttaaat 229  Q
    |||| ||||||||||||||||||||| |||||| |||||||    
T  38346742 tttatctaatcaaataattgaatttaatcctaactttaaat 38346782  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 51781614 - 51781656
Alignment:
Q  186 ttctttacctaatcaaataattgaatttagtcctaattttaaa 228  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  51781614 ttctttacttaatcaaataattgaatttattcctaattttaaa 51781656  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 29495322 - 29495382
Alignment:
Q  175 caattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttcaaat 236  Q
    ||||| |||| ||||||||||||| ||||||||||||||  |||||| ||||||||||||||    
T  29495322 caattttatcattctttacctaattaaataattgaattttatcctaa-tttaaatttcaaat 29495382  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 39549264 - 39549220
Alignment:
Q  168 taatttacaattctatccttctttacctaatcaaataattgaatt 212  Q
    |||||||||||| |||| | ||||| |||||||||||||||||||    
T  39549264 taatttacaattttatcatgctttatctaatcaaataattgaatt 39549220  T

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