View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18675_high_7 (Length: 430)
Name: NF18675_high_7
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18675_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 19343096 - 19342685
Alignment:
| Q |
2 |
cagcaagtcttggctgttcaagaaagtaacacatttgaatcacatcactaacctatgaacatgaccaaagtgacaaatttcatattctttaggagctatt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19343096 |
cagcaagtcttggctgttcaagaaagtaacacatttgaatcacatcactaacctatgaacatgactaaagtgacaaatttcatattctttaggagctatt |
19342997 |
T |
|
| Q |
102 |
tattatttctatcactaaccaacttcgtgtaatttcaagatcagagccagaggaatcaggaccattagcttcaagaatctctttcatttgatccaaagat |
201 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||||| ||||||||| |
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| T |
19342996 |
tattatttctatcactaaccatcttcgtgtaatttcaagatcagagccagatgaatcaagatcattagcctcaagaatctctttcatttgctccaaagat |
19342897 |
T |
|
| Q |
202 |
agttgctcattagtggccttacaaaactcatcatattcttgtacaacatcagaagcagattttccattagtgtgaccannnnnnncatcttccaccttag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19342896 |
agttgctcattagtggccttacaaaactcatcatattcttgtacaacatcagaagcagattttccattagtgtgaccatttttttcatcttccaccttag |
19342797 |
T |
|
| Q |
302 |
cctttttaggagaatgctctacttcatgtgccttagattctgccttctgctttcttgtcatcaccttctcttcttccccatgtgcatgatgaacattatg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19342796 |
cctttttaggagaatgctctacttcatgtgccttagattctgccttctgcttccttgtcatcaccttctcttcttccccatgtgcatgatgaacattatg |
19342697 |
T |
|
| Q |
402 |
tgacctcgattc |
413 |
Q |
| |
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|||||||||||| |
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| T |
19342696 |
tgacctcgattc |
19342685 |
T |
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