View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18675_low_1 (Length: 687)

Name: NF18675_low_1
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18675_low_1
NF18675_low_1
[»] chr2 (12 HSPs)
chr2 (366-687)||(5475924-5476243)
chr2 (453-687)||(5481101-5481330)
chr2 (38-194)||(5474454-5474618)
chr2 (190-289)||(5475218-5475315)
chr2 (281-368)||(5475804-5475891)
chr2 (570-687)||(5466460-5466577)
chr2 (602-687)||(5495061-5495146)
chr2 (251-344)||(5483523-5483616)
chr2 (652-687)||(5484144-5484179)
chr2 (364-409)||(5481015-5481060)
chr2 (652-687)||(5489329-5489364)
chr2 (255-348)||(5480857-5480950)
[»] chr3 (1 HSPs)
chr3 (222-349)||(32026770-32026895)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 366 - 687
Target Start/End: Original strand, 5475924 - 5476243
Alignment:
Q  366 atcactgatagtttcacaatacttttttagtcagtattaaacaaggaaacagaaacaaagagacaaataggttctgtagaaaaatataacaaagagacaa 465  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  5475924 atcactgaaagtttcacactacttttttagtcagtattaaacaaagaaacagaaacaaagagacagatatgttctgtagaaaaatataacaaagagacaa 5476023  T
Q  466 ataaaccaaaaatc-tacttgccattttgttctatgtata--tccattcgtcaaaagctcataatcacaaatttgaaaccatctaatatcctctggtggg 562  Q
    |||||||||||| | ||  |||||||| ||||||| || |  ||||||| ||||||||||||  |   |||||| |||||| || |||||||||||||||    
T  5476024 ataaaccaaaaagcataactgccatttggttctatataaacatccattcatcaaaagctcattctggtaaatttaaaaccaactgatatcctctggtggg 5476123  T
Q  563 gtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgt 662  Q
     ||     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5476124 atg-----atggcaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgt 5476218  T
Q  663 tagcactctttgcattaaggaagag 687  Q
    |||||||||||||||||||||||||    
T  5476219 tagcactctttgcattaaggaagag 5476243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 453 - 687
Target Start/End: Original strand, 5481101 - 5481330
Alignment:
Q  453 aacaaagagacaaataaaccaaaaatctacttgccattttgttctatgtatatccattcgtcaaaagctcataatcacaaatttgaaaccatctaatatc 552  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||    
T  5481101 aacaaagagacaaataaaccaaaaagctacttgccatcttgttctatgtatatccattcatcaaaagctcgtaatcaccaatttgaaaccatctgatatc 5481200  T
Q  553 ctctggtggggtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaaga 652  Q
    |||||||||| ||     |||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  5481201 ctctggtgggatg-----atggcaagcacaaaaatcatcagtgtacatattgttattcctctcttcttcctttttgcatcaactcaatgtgaagttaaaa 5481295  T
Q  653 gccttaatgttagcactctttgcattaaggaagag 687  Q
    |||||||||||||||||||||||||||||||||||    
T  5481296 gccttaatgttagcactctttgcattaaggaagag 5481330  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 5474454 - 5474618
Alignment:
Q  38 agagacaccgattaattattatt-acaataaaacaagaactaatccctggcaattgtttcaccaccatagaatccgtagactcattccaggtctt----- 131  Q
    ||||| ||| ||||||||||||| ||| || ||||||||||||| |||| |||||||||| |||||||||| |||||||||||||||||   ||          
T  5474454 agagataccaattaattattatttacagtataacaagaactaatacctgacaattgtttccccaccatagattccgtagactcattccattactctggaa 5474553  T
Q  132 --aagtttgcacaagaaattaatgtaccaatgtcacatctcaggcagcaggcatatccaattttt 194  Q
      |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5474554 gaaagtttgcacaagaaattaatgtaccaatgtcacatcttaggcagcaggcatatccaattttt 5474618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 5475218 - 5475315
Alignment:
Q  190 ttttttaataagaaggaacaaaaacaagcagaaaaaacaagaagtgtgtgtcaaggagaattcttaaaatagtaaacagtttatgactacatttatttta 289  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  5475218 ttttttaataagaagcaacaaaaacaagcagaaaaaacaagaagtgt--gtcaaggagaattcttaaaatagtgaacagtttatgattacatttatttta 5475315  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 5475804 - 5475891
Alignment:
Q  281 tttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatgaacttcagagaatatgcagcacatc 368  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  5475804 tttattttacagcattaccataattttgggcctgctaagttcatgtatttaatttagacaataaacttcagagcagatgcagcacatc 5475891  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 570 - 687
Target Start/End: Original strand, 5466460 - 5466577
Alignment:
Q  570 gatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcact 669  Q
    ||||| |||||||| |||| || ||||| ||  ||||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  5466460 gatggcaagcacaagaatcgtctttggatattatgttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcact 5466559  T
Q  670 ctttgcattaaggaagag 687  Q
    ||||||||||| ||||||    
T  5466560 ctttgcattaaagaagag 5466577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 687
Target Start/End: Original strand, 5495061 - 5495146
Alignment:
Q  602 ttgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagag 687  Q
    |||| ||||| |||||||| |||||||||||||| |||| || ||| |  |||  |||||||||||||||||||||||||||||||    
T  5495061 ttgtcatttccctcttctttctttttgcatcaacccaatatgtagtgagtagcaataatgttagcactctttgcattaaggaagag 5495146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 251 - 344
Target Start/End: Original strand, 5483523 - 5483616
Alignment:
Q  251 tcttaaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatga 344  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||| || ||| |||||| |||| || ||||  ||| ||| |||| ||||||    
T  5483523 tcttaaaataataaacaatttatgacttcatttattttacagcattgccgtgactttgaggctgccaatttcaaatatctaacttagtcaatga 5483616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 652 - 687
Target Start/End: Original strand, 5484144 - 5484179
Alignment:
Q  652 agccttaatgttagcactctttgcattaaggaagag 687  Q
    ||||||||||||||||||||||||||||||||||||    
T  5484144 agccttaatgttagcactctttgcattaaggaagag 5484179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 5481015 - 5481060
Alignment:
Q  364 acatcactgatagtttcacaatacttttttagtcagtattaaacaa 409  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  5481015 acatgactgatagtttcacaatattttttaagtcagtattaaacaa 5481060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 687
Target Start/End: Original strand, 5489329 - 5489364
Alignment:
Q  652 agccttaatgttagcactctttgcattaaggaagag 687  Q
    |||||||||||||| |||||||||||||||||||||    
T  5489329 agccttaatgttagtactctttgcattaaggaagag 5489364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 5480857 - 5480950
Alignment:
Q  255 aaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatgaactt 348  Q
    |||||| ||||||||| ||||||  |||||||||| | |||| || ||| |||||  |||||||  |||  ||||||||||| |||||||||||    
T  5480857 aaaataataaacagttgatgacttgatttattttataacattgccgtgactttgaagctgctaatatcaaatatttaatttaaacaatgaactt 5480950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 349
Target Start/End: Complemental strand, 32026895 - 32026770
Alignment:
Q  222 aaaaacaagaagtgtgtgtcaaggagaattcttaaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagtt 321  Q
    |||||||||||||  |||||||| || ||| |||||||| ||||| ||| ||||||  |||||||||| | ||||  | ||| |||||| |||||||  |    
T  32026895 aaaaacaagaagt--gtgtcaagaaggattgttaaaataataaacggttgatgacttgatttattttataacattgtcgtgactttgaggctgctaatat 32026798  T
Q  322 catgtatttaatttagacaatgaacttc 349  Q
    ||  | |||| |||||||||| ||||||    
T  32026797 caaatgtttagtttagacaattaacttc 32026770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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