View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18675_low_11 (Length: 262)

Name: NF18675_low_11
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18675_low_11
NF18675_low_11
[»] chr7 (3 HSPs)
chr7 (2-244)||(25635690-25635932)
chr7 (4-56)||(35451041-35451093)
chr7 (9-47)||(39653440-39653478)
[»] chr8 (3 HSPs)
chr8 (5-77)||(13402226-13402298)
chr8 (5-72)||(13396928-13396995)
chr8 (4-38)||(23489962-23489996)
[»] chr1 (4 HSPs)
chr1 (2-45)||(9457755-9457798)
chr1 (2-45)||(9461852-9461895)
chr1 (2-42)||(32617559-32617599)
chr1 (2-42)||(12990655-12990695)
[»] chr4 (5 HSPs)
chr4 (2-45)||(25968140-25968183)
chr4 (2-93)||(28147123-28147228)
chr4 (2-41)||(38411858-38411897)
chr4 (2-47)||(13198064-13198109)
chr4 (2-47)||(29866163-29866208)
[»] chr2 (5 HSPs)
chr2 (2-40)||(19263873-19263911)
chr2 (2-45)||(17988973-17989016)
chr2 (2-41)||(37794641-37794680)
chr2 (5-38)||(35016316-35016349)
chr2 (2-46)||(5430289-5430333)
[»] chr6 (2 HSPs)
chr6 (2-45)||(26660602-26660645)
chr6 (2-45)||(26766573-26766616)
[»] chr5 (1 HSPs)
chr5 (2-47)||(37247655-37247700)
[»] chr3 (1 HSPs)
chr3 (2-81)||(11783353-11783435)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 25635932 - 25635690
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaattgcaaaatcctatacgtgaccgcgaacctgaccgttatttaaaac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  25635932 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaatcgcaaaatcctatacgtgaccgcgaacctgacctttatttaaaac 25635833  T
Q  102 cttaactaaaactacagtgatgaacacctccatttccttcaagaaatggaaaaatcttagctcgtttaccaatgtagtaagagcacagatctcatagtta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25635832 cttaactaaaactacagtgatgaacacctccatttccttcaagaaatggaaaaatcttagctcgtttaccaatgtagtaagagcacagatctcatagtta 25635733  T
Q  202 acttatccaccaaatcaaaatgcaaggcatatagggcctgttt 244  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  25635732 acttatccaccaaattaaaatgcaatgcatatagggcctgttt 25635690  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 35451093 - 35451041
Alignment:
Q  4 caatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaat 56  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  35451093 caatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaat 35451041  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 39653478 - 39653440
Alignment:
Q  9 ttgtgattaattcacaccgcaacaaccgcaatccgtaac 47  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  39653478 ttgtgattaattcacaccgcaacaaccacaatccataac 39653440  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 13402226 - 13402298
Alignment:
Q  5 aatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaattgcaaaatcctatacgtgacc 77  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||  | ||||| |||||| ||||    
T  13402226 aatgttgtgattaattcacaccgcgacaaccgcaatccgtaacagctgaaatcacgaaatcttatacgcgacc 13402298  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 13396928 - 13396995
Alignment:
Q  5 aatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaattgcaaaatcctatacg 72  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||| ||||| |||||||| ||||||    
T  13396928 aatgttgtgattaattcacaccgcgacagccgcaatccataacagctgaaatcgcaaaatcttatacg 13396995  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 23489996 - 23489962
Alignment:
Q  4 caatgttgtgattaattcacaccgcaacaaccgca 38  Q
    |||||||||||||||||||||||||||||||||||    
T  23489996 caatgttgtgattaattcacaccgcaacaaccgca 23489962  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 9457755 - 9457798
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 45  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9457755 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 9457798  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 9461852 - 9461895
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 45  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9461852 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 9461895  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 32617599 - 32617559
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatcc 42  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  32617599 tgcaatgttgtgattaatttacaccgcgacaaccgcaatcc 32617559  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 12990655 - 12990695
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatcc 42  Q
    ||||||||||||| ||||||||||||| ||||| |||||||    
T  12990655 tgcaatgttgtgactaattcacaccgcgacaactgcaatcc 12990695  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 25968140 - 25968183
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 45  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  25968140 tgcaatgttgtgattaattcacaccgcgacaaccgcaatccgta 25968183  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 28147123 - 28147228
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatc-----cgtaaca---------gccgaaattgcaaaatcctatacgtgaccgcgaacctga 87  Q
    ||||||||||||||||||||||||||| ||||||||| ||     |||||||         |||||||||||||||||||||| |||||||||| | |||    
T  28147123 tgcaatgttgtgattaattcacaccgcgacaaccgcactctgtatcgtaacacccgtaatggccgaaattgcaaaatcctatatgtgaccgcgaccgtga 28147222  T
Q  88 ccgtta 93  Q
    ||||||    
T  28147223 ccgtta 28147228  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 38411897 - 38411858
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatc 41  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  38411897 tgcaatgttgtgattaattcacagcgcgacaaccgcaatc 38411858  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 13198109 - 13198064
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 47  Q
    ||||||||||||||||||||||||||| |||| | |||||| ||||    
T  13198109 tgcaatgttgtgattaattcacaccgcgacaatcacaatccttaac 13198064  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 29866163 - 29866208
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 47  Q
    ||||||||||||||||||||||||| | |||||| ||||| |||||    
T  29866163 tgcaatgttgtgattaattcacaccacgacaaccacaatctgtaac 29866208  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 19263873 - 19263911
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaat 40  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19263873 tgcaatgttgtgattaattcacagcgcaacaaccgcaat 19263911  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 17989016 - 17988973
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 45  Q
    |||||| |||||||||||||||||| | ||||||||||||||||    
T  17989016 tgcaatattgtgattaattcacacctcgacaaccgcaatccgta 17988973  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 37794680 - 37794641
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatc 41  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  37794680 tgcaatgttgtgattaattcacaccacgacaaccgcaatc 37794641  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 35016349 - 35016316
Alignment:
Q  5 aatgttgtgattaattcacaccgcaacaaccgca 38  Q
    |||||||||||||||||||||||| |||||||||    
T  35016349 aatgttgtgattaattcacaccgcgacaaccgca 35016316  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5430289 - 5430333
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaa 46  Q
    |||||| |||||||||||||||||||| |||||| ||||| ||||    
T  5430289 tgcaatattgtgattaattcacaccgcgacaaccacaatctgtaa 5430333  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26660645 - 26660602
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 45  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  26660645 tgcaatgttgtgattaattcacaccgtgacaaccgcaattcgta 26660602  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26766616 - 26766573
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 45  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  26766616 tgcaatgttgtgattaattcacaccgtgacaaccgcaattcgta 26766573  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 37247655 - 37247700
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 47  Q
    |||| |||||||||||||||||||||| |||||| ||||| |||||    
T  37247655 tgcattgttgtgattaattcacaccgcgacaaccacaatctgtaac 37247700  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 11783435 - 11783353
Alignment:
Q  2 tgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac---agccgaaattgcaaaatcctatacgtgaccgcga 81  Q
    ||||||||||| |||| ||||||  || |||||| |||||||||||   |||| |||| || ||||||||||| |||||||||    
T  11783435 tgcaatgttgtaattacttcacaaagcgacaaccacaatccgtaacgcaagccaaaatagcgaaatcctatacttgaccgcga 11783353  T

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