View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18675_low_14 (Length: 242)
Name: NF18675_low_14
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18675_low_14 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 6555007 - 6554778
Alignment:
| Q |
13 |
catcagtgtcgatgaggataggcctgcagcgcttatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgagc |
112 |
Q |
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| T |
6555007 |
catcagtgtcgatgaggataggcctgcagcgcttatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgagc |
6554908 |
T |
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| Q |
113 |
atatgcgagtgatgccactttctcactattgaatttctcccatttcttcccgttgaaaccctgcaagaattgcatcacaggctttagtctatcgatacat |
212 |
Q |
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| T |
6554907 |
atatgcgagtgatgccactttctcactattgaatttctcccatttcttcccgttgaaaccctgcaagaattgcatcacaggctttagtccatcgatacat |
6554808 |
T |
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| Q |
213 |
ggcatgtgtgtctgatgtatgtgattaatt |
242 |
Q |
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| T |
6554807 |
ggcatgtgtgtctgatgtatgtgattaatt |
6554778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 49057548 - 49057745
Alignment:
| Q |
13 |
catcagtgtcgatgaggataggcctgcagcgcttatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgagc |
112 |
Q |
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| T |
49057548 |
catcagtgtcgatgaggataggcctgcagtgcttatccacattcatcaagcttgaatgctggaaatgattaacaagagctgttttcccttgtatgcgagc |
49057647 |
T |
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| Q |
113 |
atatgcgagtgatgccactttctcactattgaatttctcccatttcttcccgttgaaaccctgcaagaattgcatcacaggctttagtctatcgataca |
211 |
Q |
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| T |
49057648 |
atatgcaagtgacgccactttctcactgttgaatttctcccattttttcccattgaacgcctgcaa-aattgaatcgctggatttagtctatcaataca |
49057745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 40158054 - 40158187
Alignment:
| Q |
45 |
ttatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgagcatatgcgagtgatgccactttctcactattga |
144 |
Q |
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| T |
40158054 |
ttatcttcattcatcaggcttgaattctggaaatgagaaacaagagaagctcttccttgaattcgggcatatgcaagtgatgctactttttcactgttaa |
40158153 |
T |
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| Q |
145 |
atttctcccatttcttcccgttgaaaccctgcaa |
178 |
Q |
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| T |
40158154 |
acttctcccatttcttaccatggaaagcctgcaa |
40158187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 45037865 - 45037983
Alignment:
| Q |
45 |
ttatcctcattcattaagcttgaattctggaagtgagcaacgagggctgcttttccttgtatgcgagcatatgcgagtgatgccactttctcactattga |
144 |
Q |
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| T |
45037865 |
ttatcttcattcatcaggcttgaattctggaaatgagcaataagagcagattttccttgaattcgggcatatgcaagtactgctaccttttcactgttaa |
45037964 |
T |
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| Q |
145 |
atttctcccatttcttccc |
163 |
Q |
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| T |
45037965 |
acttctcccattttttccc |
45037983 |
T |
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