View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18675_low_16 (Length: 237)
Name: NF18675_low_16
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18675_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6554544 - 6554325
Alignment:
| Q |
1 |
tatggtgttcatcgattgcagccaacagcatcttggaagtatacctgtaaatgatcaaagtcttagtcaagagaaattgagatgttaagaaaatgattta |
100 |
Q |
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| T |
6554544 |
tatggtgttcatcgattgcagccaacagcatcttggaagtatacctgtaaatgatcaaaatcttagtcaagagaaat-gagatgttaagaaaatgattta |
6554446 |
T |
|
| Q |
101 |
aatcataatctaaaacataccaaatgaatatacaaacttttcgcattagagaatatgaaaagcattgatactacttacttgttaggaatgttcttaatca |
200 |
Q |
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| T |
6554445 |
aatcataatctaaaacataccaaatgaatatacaaactttttgcattagagaatatgaaaaacatcgatgctacttacttgttaggaatgttcttaatca |
6554346 |
T |
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| Q |
201 |
taagtgttgttcggttatctt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
6554345 |
taagtgttgttcggttatctt |
6554325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 49058022 - 49058245
Alignment:
| Q |
2 |
atggtgttcatcgattgcagccaacagcatcttggaagtatacctgtaaatgatcaaagtcttagtcaagagaaattgagatgtt--aagaaaatgattt |
99 |
Q |
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|||| ||||||| ||||||||||||| ||||| |||||||||||| || ||||| |||||||||||||| ||||| | || ||||| |||| |
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| T |
49058022 |
atggcgttcatcaattgcagccaacaacatctcagaagtatacctgcaac------aagtcatagtcaagagaaat-gagatttacaaaaaaaattattt |
49058114 |
T |
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| Q |
100 |
aaatcataatctaaaacataccaaatgaatatacaaacttttcgcattagagaatatg---aaaagcat------tgatactacttacttgttaggaatg |
190 |
Q |
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||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |||| || | |||| ||||||||||||||||| |
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| T |
49058115 |
aaatcataatccaaaacataccaaatgaatatacaatttttttgcattagagaatatataaaaaaaaataaaaaataatacagcttacttgttaggaatg |
49058214 |
T |
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| Q |
191 |
ttcttaatcataagtgttgttcggttatctt |
221 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49058215 |
ttcttaatcataagtgttgttcggttatctt |
49058245 |
T |
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