View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18675_low_19 (Length: 213)
Name: NF18675_low_19
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18675_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 13111609 - 13111426
Alignment:
| Q |
12 |
tagcataggacatcaatctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattatttctttgagaatcaaacgaac |
111 |
Q |
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| T |
13111609 |
tagcataggacatcaatctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattatttctttgagaatcaaatgaac |
13111510 |
T |
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| Q |
112 |
tccaaccacattgttattttccaaatatagcttgaattcaaacatgtctaccttaacccacatgggtgatggaacagcaagatg |
195 |
Q |
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| T |
13111509 |
tccaaccacattgttattttccaaatatagcttgaattcaaacatgtctaccttaacccacatgggtgatggaacagcaagatg |
13111426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 18671570 - 18671753
Alignment:
| Q |
12 |
tagcataggacatcaatctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattatttctttgagaatcaaacgaac |
111 |
Q |
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| T |
18671570 |
tagcataggacatcaatctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattatttctttgagaatcaaatgaac |
18671669 |
T |
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| Q |
112 |
tccaaccacattgttattttccaaatatagcttgaattcaaacatgtctaccttaacccacatgggtgatggaacagcaagatg |
195 |
Q |
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| T |
18671670 |
tccaaccacattgttattttccatatatagcttcaatttaaacatgtctaccttaacccacatcggtgatggaaccgcaagatg |
18671753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 13004850 - 13004912
Alignment:
| Q |
70 |
tctttcaatctaatggattatttctttgagaatcaaacgaactccaaccacattgttattttc |
132 |
Q |
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| T |
13004850 |
tctttcaatctaatggatgatttctatgagaatcaaatgaactccaaccacattgttattttc |
13004912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 13006076 - 13006136
Alignment:
| Q |
27 |
atctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattat |
90 |
Q |
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| T |
13006076 |
atctctttcagtctttct-aaatgccactctctaa--accacatctttcaaactaatggattat |
13006136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 13121311 - 13121250
Alignment:
| Q |
27 |
atctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattat |
90 |
Q |
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| T |
13121311 |
atctctttcagtctttctcaattgccattctctaa--acgacatatttcaatcaaatgggttat |
13121250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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