View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18675_low_2 (Length: 504)
Name: NF18675_low_2
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18675_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 48 - 490
Target Start/End: Complemental strand, 48495876 - 48495438
Alignment:
| Q |
48 |
cacatattcagattatctcagctggacttgttatagaatttgcattttagcttctaaatactgttacttcagtgggaatctatacccagatacaaaagtt |
147 |
Q |
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| T |
48495876 |
cacatattcagattatctcagctggacttgttatagaattagcattttagcttctaaatactgttacttcagtgggaatctatacccagatacaaaagtt |
48495777 |
T |
|
| Q |
148 |
ttgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttcaaatttgatgtagtc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48495776 |
ctgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttgaaatttgatgtagtc |
48495677 |
T |
|
| Q |
248 |
ctaattaagttaagttttaaatcaaatctaattcaagtcaagaacagttctatcaatcaacatgaaatatggttagtttcaagttgcttgcttgctccac |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48495676 |
ctaattaagttaagttttaaatcaaatctaattcaagtcaagaacagttctatcaatcaacatgaaatatggttagtttcaagttgct----tgctccac |
48495581 |
T |
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| Q |
348 |
tccttggctgctggccacccagatgtctatgacattttaaacatttcttagttttaacgtttgaatagttttgattggagtatgaatcagttctgccagg |
447 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48495580 |
tccttggctgctggccactcagatgtctatgacattttaaacatttcttagttttaacgtttgaatagttttgattggagtatgaatcagttctgccagg |
48495481 |
T |
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| Q |
448 |
aaaatgttccaatnnnnnnngatgaaaaatgtagttggatttg |
490 |
Q |
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| T |
48495480 |
aaaatgttccaataaaaaaagatgaaaaatgtagttggatttg |
48495438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 48495947 - 48495905
Alignment:
| Q |
6 |
gacatcatcatgcaagaaaaaggaacaagagcaagtgggttgc |
48 |
Q |
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| T |
48495947 |
gacatcatcatgcaagaaaaaggaacaagagcaagtgggttgc |
48495905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 39093324 - 39093252
Alignment:
| Q |
141 |
aaaagttttgccatcatctaaactctttaatttacaattctatccttctttacctaatcaaataattgaattta |
214 |
Q |
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|||| ||| ||| |||| |||||||||| |||||||||| |||| || |||||| ||||||||||||||||||| |
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| T |
39093324 |
aaaattttagccttcatttaaactcttttatttacaattttatcatt-tttaccaaatcaaataattgaattta |
39093252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 28562076 - 28562135
Alignment:
| Q |
164 |
tctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaatt |
223 |
Q |
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| T |
28562076 |
tcttttatttacaaatttacccttctttacctaattaaataattgaattcaatcctaatt |
28562135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 43471219 - 43471291
Alignment:
| Q |
159 |
taaactctttaatttacaattctatccttctttacctaatcaaataattgaatttagtcctaattttaaattt |
231 |
Q |
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| T |
43471219 |
taaactcatttatttacaattctatacttctttatctaatcaaatatttgaatttaatcataattttaaattt |
43471291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 38346742 - 38346782
Alignment:
| Q |
189 |
tttacctaatcaaataattgaatttagtcctaattttaaat |
229 |
Q |
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| T |
38346742 |
tttatctaatcaaataattgaatttaatcctaactttaaat |
38346782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 51781614 - 51781656
Alignment:
| Q |
186 |
ttctttacctaatcaaataattgaatttagtcctaattttaaa |
228 |
Q |
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| T |
51781614 |
ttctttacttaatcaaataattgaatttattcctaattttaaa |
51781656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 29495322 - 29495382
Alignment:
| Q |
175 |
caattctatccttctttacctaatcaaataattgaatttagtcctaattttaaatttcaaat |
236 |
Q |
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| T |
29495322 |
caattttatcattctttacctaattaaataattgaattttatcctaa-tttaaatttcaaat |
29495382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 39549264 - 39549220
Alignment:
| Q |
168 |
taatttacaattctatccttctttacctaatcaaataattgaatt |
212 |
Q |
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|||||||||||| |||| | ||||| ||||||||||||||||||| |
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| T |
39549264 |
taatttacaattttatcatgctttatctaatcaaataattgaatt |
39549220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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