View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18675_low_20 (Length: 210)
Name: NF18675_low_20
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18675_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 5544657 - 5544850
Alignment:
| Q |
1 |
gaaatcaattaagaaaaactaagatatgaataaatggttgagagtttgagtccattaattcgaagttttggatcatgagccactacactataaacacaaa |
100 |
Q |
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| T |
5544657 |
gaaatcaattaagaaaaactaggatatgaataaatggttgagagtttgggtccaataattcgaagttttggatcatgagccactacactataaacacaaa |
5544756 |
T |
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| Q |
101 |
ctaaatcactatgtttctacattccaatcgagtatattcaatagtcaaaatcgattaagaaaaactaggatatgaataaatggttcagagtttg |
194 |
Q |
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| T |
5544757 |
ctaaatcactatgtttctacattccaatcgagtatattcaatagtcgaaatcaattaagaaaaactaagatatgaataaatggttcagagtttg |
5544850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 5544803 - 5544901
Alignment:
| Q |
1 |
gaaatcaattaagaaaaactaagatatgaataaatggttgagagtttgagtccattaattcgaagttttggatcatgagccactacactataaacacaa |
99 |
Q |
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| T |
5544803 |
gaaatcaattaagaaaaactaagatatgaataaatggttcagagtttgagtccattaattcgaagttttggatcatgagccactacactataaacacaa |
5544901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 5544595 - 5544704
Alignment:
| Q |
85 |
acactataaacacaaactaaatcactatgtttctacattccaatcgagtatattcaatagtcaaaatcgattaagaaaaactaggatatgaataaatggt |
184 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
5544595 |
acactaaaaacacaaactaaatcactatgtttttacattccgatcgagtatattcaatagtcgaaatcaattaagaaaaactaggatatgaataaatggt |
5544694 |
T |
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| Q |
185 |
tcagagtttg |
194 |
Q |
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| T |
5544695 |
tgagagtttg |
5544704 |
T |
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