View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18675_low_5 (Length: 466)

Name: NF18675_low_5
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18675_low_5
NF18675_low_5
[»] chr8 (2 HSPs)
chr8 (18-445)||(33823785-33824212)
chr8 (315-418)||(28437310-28437413)
[»] chr5 (2 HSPs)
chr5 (262-419)||(13481015-13481172)
chr5 (339-396)||(18198182-18198239)
[»] chr4 (3 HSPs)
chr4 (285-397)||(23663582-23663694)
chr4 (372-418)||(35721705-35721751)
chr4 (307-397)||(45763667-45763757)
[»] chr7 (1 HSPs)
chr7 (279-418)||(8132030-8132169)
[»] chr2 (4 HSPs)
chr2 (291-394)||(41335315-41335418)
chr2 (340-418)||(3591840-3591918)
chr2 (369-419)||(3945955-3946005)
chr2 (312-397)||(24563321-24563406)
[»] chr1 (1 HSPs)
chr1 (367-397)||(34645998-34646028)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 33824212 - 33823785
Alignment:
Q  18 cctatgaagttattgccttcttccttaacatgattagggttagggttttggttttgactagatcttagcaaagaaagtatatgagaattttgaggagaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824212 cctatgaagttattgccttcttccttaacatgattagggttagggttttggttttgactagatcttagcaaagaaagtatatgagaattttgaggagaac 33824113  T
Q  118 cccagaggatttgactttgtggtggaacaacgtgttcgagatcaaacccttgaccacttgttgaccttccaataaactccgaagaagaaactgttttcat 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824112 cccataggatttgactttgtggtggaacaacgtgttcgagatcaaacccttgaccacttgttgaccttccaataaactccgaagaagaaactgttttcat 33824013  T
Q  218 cttgtttgtagctatttttgccgtgttgtttgaggcaccgatgctcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctcctttt 317  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824012 cttgtttgtagctatttttgccgcgttgtttgaggcaccgatgctcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctcctttt 33823913  T
Q  318 gtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823912 gtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggac 33823813  T
Q  418 accttagatgttgttggttttctgatga 445  Q
    ||||||||||||||||||||||||||||    
T  33823812 accttagatgttgttggttttctgatga 33823785  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 418
Target Start/End: Complemental strand, 28437413 - 28437310
Alignment:
Q  315 tttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttg 414  Q
    ||||||||||| |  | |||||| ||||||||||| |  || ||||||||  | ||||||||||||||||| |||||||||||||  || || |||||||    
T  28437413 tttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgtagttgttgtagtaacagaattttgtgtttggagaatcacatcttg 28437314  T
Q  415 gaca 418  Q
    ||||    
T  28437313 gaca 28437310  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 419
Target Start/End: Complemental strand, 13481172 - 13481015
Alignment:
Q  262 tcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagt 361  Q
    |||||||||| |  || ||||| || ||||||||||| | |||||| || |||||||||||||| |  |  ||||| ||||||||||| |  || || ||    
T  13481172 tcttgttttttctacatccaccaccgattggaacgttgcgtaaagctccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgt 13481073  T
Q  362 gaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggacac 419  Q
     | | |||||||||||||||| || ||||||||||| | |||||| ||||||||||||    
T  13481072 taagctatagttgttgtagtagcagaattttgtgttgggtgagtcacatcttggacac 13481015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 396
Target Start/End: Complemental strand, 18198239 - 18198182
Alignment:
Q  339 ttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgt 396  Q
    |||||||| || ||||||||  ||| ||| |||||||||||||| |||||||||||||    
T  18198239 ttgcagaagtgtcgaggctgtttgacgttgtagttgttgtagtagcaaaattttgtgt 18198182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 397
Target Start/End: Complemental strand, 23663694 - 23663582
Alignment:
Q  285 ccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaac 384  Q
    |||| |||||| ||||| |  ||||| ||| ||||||||||||| |  |||||||||||||| || ||||| ||||||||| | ||||||||| |||| |    
T  23663694 ccaactggaacatttctaagtgcaccccctcttgtccaataacgcctacatgtcttgcagaagtgacgaggttgagtgaggctgtagttgttgaagtagc 23663595  T
Q  385 aaaattttgtgtt 397  Q
    ||||||| |||||    
T  23663594 aaaatttagtgtt 23663582  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 35721751 - 35721705
Alignment:
Q  372 ttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggaca 418  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||||    
T  35721751 ttgttgtagtaacaaaactttgtgtttgttgaatcacatcttggaca 35721705  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 397
Target Start/End: Original strand, 45763667 - 45763757
Alignment:
Q  307 cacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtt 397  Q
    |||| ||||| ||||| ||||| |||||  | |||||||| || |||||||| | |||||| ||||| ||||||||||| ||||| |||||    
T  45763667 caccgcctttagtccagtaacgtcggcagtttttgcagaagtgacgaggctgggagaggttgtagttattgtagtaacagaatttggtgtt 45763757  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 418
Target Start/End: Original strand, 8132030 - 8132169
Alignment:
Q  279 ccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgt 378  Q
    ||||||||||  ||||||||||  |  ||||| ||||| |||||||||||||| || || ||||| |||||||| || || |  || || ||||||||||    
T  8132030 ccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaagattgtagttgttgt 8132129  T
Q  379 agtaacaaaattttgtgtttgatgagtcgcatcttggaca 418  Q
    |||| || || |||||||||| ||| || |||||||||||    
T  8132130 agtagcagaactttgtgtttgttgattcacatcttggaca 8132169  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 41335418 - 41335315
Alignment:
Q  291 ggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaatt 390  Q
    ||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||| || || |  || ||||  | ||||||||||||||||||||||||||    
T  41335418 ggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaatt 41335319  T
Q  391 ttgt 394  Q
    ||||    
T  41335318 ttgt 41335315  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 3591918 - 3591840
Alignment:
Q  340 tgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggaca 418  Q
    |||||||||||||||| ||||    ||||||||||||||||||||||||||| || ||||  ||||| |||||||||||    
T  3591918 tgcagaaatggcgaggttgagacttgttatagttgttgtagtaacaaaatttggtatttgtagagtcacatcttggaca 3591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 3945955 - 3946005
Alignment:
Q  369 tagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggacac 419  Q
    |||||||||||||||||||| ||||||||||||||||| || | |||||||    
T  3945955 tagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacac 3946005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 24563406 - 24563321
Alignment:
Q  312 ccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtt 397  Q
    ||||| ||||| || ||||||||  | || |||||||| |||||||||| |||||| |||||||||||||| || ||||| |||||    
T  24563406 cctttggtccagtagcgacggcagtttttacagaaatgacgaggctgagagaggttgtagttgttgtagtagcagaatttcgtgtt 24563321  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 397
Target Start/End: Complemental strand, 34646028 - 34645998
Alignment:
Q  367 tatagttgttgtagtaacaaaattttgtgtt 397  Q
    |||||||||||||||||||||||||||||||    
T  34646028 tatagttgttgtagtaacaaaattttgtgtt 34645998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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