View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18675_low_6 (Length: 431)
Name: NF18675_low_6
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18675_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 35448071 - 35448472
Alignment:
| Q |
15 |
atcaaagcatgtgttcatccatgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaattnnnnnnnttcgt |
114 |
Q |
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| T |
35448071 |
atcaaagcatgtgttcatccatgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaattaaaaaaattcgt |
35448170 |
T |
|
| Q |
115 |
tcatgtagtaaaaactaattaaaaactcaggtagcttaaattgcactctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaa |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448171 |
gcatgtagtaaaaactaattaaaaactcacgtagcttaaattgcactctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaa |
35448270 |
T |
|
| Q |
215 |
taatagaagaaccatagcaacacatatatcatgcaagtggcttcctaatttggtcctaacaatagaagtaaagaacatacctaagttaatgatgatcaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448271 |
taatagaagaaccatagcaacacatatatcatgcaagtggcttcctaatttggtcctaacaatagaagtaaagaacatacctaagttaatgatgatcaaa |
35448370 |
T |
|
| Q |
315 |
gaccgtcaactattgactttggaagtcagcatatcaggagtttcaggaatgttataaagaccaaaaggatcgtcgtcaggttcacctgttaaacaaggag |
414 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448371 |
gaccgtcaactattgactttagaagtcagcatatcaggagtttcaggaatgttataaagaccaaaaggatcgtcgtcaggttcacctgttaaacaaggag |
35448470 |
T |
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| Q |
415 |
at |
416 |
Q |
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|| |
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| T |
35448471 |
at |
35448472 |
T |
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