View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18675_low_8 (Length: 429)
Name: NF18675_low_8
Description: NF18675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18675_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 39055437 - 39055847
Alignment:
| Q |
1 |
tgataatatactgaaaactatttgacgcttgagtctgatttatttctcgttatagcagtttgtatatcaatttaaaatataaaaatcttagtcaattgta |
100 |
Q |
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| T |
39055437 |
tgatcatatactgaaaactatttgacgcttgagtctgatttatttctcgttatagcagtttgtatatcaatttaaaatataaaaatcttagtcaattgta |
39055536 |
T |
|
| Q |
101 |
cattagaaattaatcttctcaatatgttatgttacagggatattaaacctgataacttattacttgataaatatggacacttgaaactatcggattttgg |
200 |
Q |
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| T |
39055537 |
cattagaaattaatcttctcaatatgttatgatacagggatattaaacctgataacttattacttgataaatatggacacttgaaactatcggattttgg |
39055636 |
T |
|
| Q |
201 |
actatgtaaaccgttagactgtagtgtacttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccg |
300 |
Q |
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| T |
39055637 |
actatgtaaaccgttagactgtagtgtacttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttcca |
39055736 |
T |
|
| Q |
301 |
aaacgtacacaacaagaacagttggaaaactggcagaaaaataggaggacacttgtaagttcatttctatcaagtcgtggtcactgttatatttattaca |
400 |
Q |
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| T |
39055737 |
aaacgtacacaacaagaacagttggaaaactggcagaaaaataggaggacacttgtaagttcatttctatcaagtcgtggtcactgttatatttattaca |
39055836 |
T |
|
| Q |
401 |
attactgtgac |
411 |
Q |
| |
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| T |
39055837 |
attactgtgac |
39055847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 361
Target Start/End: Complemental strand, 30393849 - 30393618
Alignment:
| Q |
130 |
tgttacagggatattaaacctgataacttattacttgataaatatggacacttgaaactatcggattttggactatgtaaaccgttagactgtagtgtac |
229 |
Q |
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|||| ||||||||| || ||||| |||||||||||||||| |||||||||| ||| ||| || || |||||||| |||||||| ||||| |||||| | |
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| T |
30393849 |
tgttgcagggatatcaagcctgacaacttattacttgatagatatggacacctgagactgtctgactttggactttgtaaaccattagattgtagtacgc |
30393750 |
T |
|
| Q |
230 |
ttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccgaaacgtacacaacaagaacagttggaaaa |
329 |
Q |
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|||||||| || || ||| | || ||||||| |||||| | ||||| ||||| || ||| || ||| ||||| |||||||||||||| || |||| |
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| T |
30393749 |
ttgaagaaaaggatttctctgtgggtcagaatgtgaatggatctacacagaatgaggagcgttcagctccaaaacgcacacaacaagaacaactgcaaaa |
30393650 |
T |
|
| Q |
330 |
ctggcagaaaaataggaggacacttgtaagtt |
361 |
Q |
| |
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|||||| || || |||||||| |||||||||| |
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|
| T |
30393649 |
ctggcaaaagaacaggaggacgcttgtaagtt |
30393618 |
T |
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