View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18676_high_2 (Length: 433)
Name: NF18676_high_2
Description: NF18676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18676_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 49513433 - 49513827
Alignment:
| Q |
20 |
tagagaatgaatcaaattctactacagatgaagatactgacacacttgatatgcaggtactgttatgagcaaaattcgaaatgtctcgtctggtattttc |
119 |
Q |
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| T |
49513433 |
tagagaatgaatcaaattctactacagatgaagatactga-----------tgcaggtactgttatgagcaaaattcgaaatgtctcgtctggtattttc |
49513521 |
T |
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| Q |
120 |
aaatatatcacttctttttaatcattattagtgtt---gttgttgttataaaataggaacacgaagaggtatcagtgattgagaaagatactcataggct |
216 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49513522 |
aaatctatcacttctttttaatcattattagtgttgttgttgttgttataaaataggaacacgaagaggtatcagtgattgagaaagatactcataggct |
49513621 |
T |
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| Q |
217 |
ggctgttgtctacatggactggaactatgtgaaggtgtgtatgtaagtcaacatttggaattgaatattgttaaacttccctttaagaattcattatatc |
316 |
Q |
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| T |
49513622 |
ggctgttgtctacatggactggaactatgtgaaggtgtgtatgtaagtcaacatttggaatttaatattgttaaacttccctttaagaattcattatatc |
49513721 |
T |
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| Q |
317 |
aagctgtaagtattgcatgatgttccaaacatactttaacactcaaaagtaatgtgtaaacatggtgaataagacaacatcattcttttttcttcttcct |
416 |
Q |
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| T |
49513722 |
aagctgtaagtattgcatgatgttccaaacatactttaacactcaaaagtaatgtgtaaacatggtgaataagacaacatcattcttttttcttcttcct |
49513821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 422
Target Start/End: Original strand, 27745302 - 27745458
Alignment:
| Q |
265 |
caacatttggaattgaatattgttaaacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaa |
364 |
Q |
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| T |
27745302 |
caacatttagaattgaagattgttgaacttccttttaagcattcattgtatcattctgtaagtattgcatggtgttccaagcttactttaacactgaaga |
27745401 |
T |
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| Q |
365 |
gtaatgtgtaaacatggtgaataagacaacatcattcttttttcttcttcctaccttt |
422 |
Q |
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| T |
27745402 |
gtaatgtgtaaacatggagactta-aaaatatcgttcttttttcttcttcataccttt |
27745458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 27744743 - 27744857
Alignment:
| Q |
144 |
ttattagtgttgttgttgttataaaataggaacacgaaga---ggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaa |
240 |
Q |
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| T |
27744743 |
ttattagtgtttttgttgttattaaataggatcaggaagacgaggtatcggtgattgataaagatacttataggcttgctgttgtcaacatggactggaa |
27744842 |
T |
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| Q |
241 |
ctatgtgaaggtgtg |
255 |
Q |
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| T |
27744843 |
ctatgtgaaggtgtg |
27744857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 27744643 - 27744686
Alignment:
| Q |
43 |
acagatgaagatactgacacacttgatatgcaggtactgttatg |
86 |
Q |
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| T |
27744643 |
acagatgaagatactgacacacttgatatgcaggtacttttatg |
27744686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 38529668 - 38529589
Alignment:
| Q |
179 |
gaagaggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaactatgtgaaggtgtgtat |
258 |
Q |
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| T |
38529668 |
gaagaggtagcagagattgagaaagaaacacataggttggctgttgttaatatggactggcggtatgtgaaggtgcgtat |
38529589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 27744597 - 27744629
Alignment:
| Q |
21 |
agagaatgaatcaaattctactacagatgaaga |
53 |
Q |
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| T |
27744597 |
agagaatgaatcaaattctactacagacgaaga |
27744629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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