View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18676_high_3 (Length: 391)
Name: NF18676_high_3
Description: NF18676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18676_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 39 - 373
Target Start/End: Complemental strand, 39852457 - 39852111
Alignment:
| Q |
39 |
gtttataatttaaatgaataattaagcgcgttactgctatcgatttaagggcagtaacttgcttattgcggnnnnnnnctgaagaatatgtttgatactc |
138 |
Q |
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| T |
39852457 |
gtttataatttaaatgaataattaagcacgttactgctatcgatttaatggcagtaacttgcttattgcggtttttttctgaagaatatgtttgatactc |
39852358 |
T |
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| Q |
139 |
atcataaaccaacaaattcaaggtacaagacaatgtcttcatgagttacnnnnnnn---atcaaaataactcatctaagcaactt--------acttagg |
227 |
Q |
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| T |
39852357 |
atcataaaccaacaaattcaaggtacaagacaatgtcttcatgagttacttttttttttatcaaaataactcatctaagcaactttagtccacacttagg |
39852258 |
T |
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| Q |
228 |
atatttggaactttatatgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatacgaatcaattggtcgac-ttataca |
326 |
Q |
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| T |
39852257 |
acatttggaactttatatgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatacgaatcaattagtcgactttttaca |
39852158 |
T |
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| Q |
327 |
aataatgaataaacaactcaccgttgatcaaatgttttaggtgtatt |
373 |
Q |
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| T |
39852157 |
aataatgaataaacaactcaccgttgatcaaatgttttaggagtatt |
39852111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 43208199 - 43208150
Alignment:
| Q |
324 |
acaaataatgaataaacaactcaccgttgatcaaatgttttaggtgtatt |
373 |
Q |
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| T |
43208199 |
acaaataatgaataaacaactcaccgttgatcaaatgttttaggagtatt |
43208150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 43187404 - 43187354
Alignment:
| Q |
323 |
tacaaataatgaataaacaactcaccgttgatcaaatgttttaggtgtatt |
373 |
Q |
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| T |
43187404 |
tacaaataatgaataaacaactcaccgttgatcaaatgtttcaggagtatt |
43187354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 43189518 - 43189459
Alignment:
| Q |
244 |
atgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatac |
303 |
Q |
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| T |
43189518 |
atgtaaggctattcatagcttggaacggaagcgatgatggcatccctgtcaaggatatac |
43189459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 43208314 - 43208240
Alignment:
| Q |
233 |
tggaactttatatgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatacgaatc |
308 |
Q |
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| T |
43208314 |
tggaacttta-atgtaaggctcctcatagcttggaatagaagcgaggatagcatccttgtcaaggatataccaatc |
43208240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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