View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18676_high_6 (Length: 207)
Name: NF18676_high_6
Description: NF18676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18676_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 18671692 - 18671880
Alignment:
| Q |
1 |
atatatagcttcaatttaaacatgtctaccttaacccacatcggtgatggaacagcaagatgcatgtaagaacaacttaaaactttagataatggtgcat |
100 |
Q |
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| T |
18671692 |
atatatagcttcaatttaaacatgtctaccttaacccacatcggtgatggaaccgcaagatgcatgtaagaaccacttaaaactttagataatggtgcat |
18671791 |
T |
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| Q |
101 |
gtaagaacagcatgatgctcgtattttcctcaagtagtataatgtctactcttagatcttgtaatttgaggatttcgacgagatgtgga |
189 |
Q |
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| T |
18671792 |
gtaagaacagcatgatgctcgtattttcctcaagtagtataatgtctactcttagatcctgtaatttgaggatttcgacgagatgtgga |
18671880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 13111485 - 13111299
Alignment:
| Q |
3 |
atatagcttcaatttaaacatgtctaccttaacccacatcggtgatggaacagcaagatgcatgtaagaacaacttaaaactttagataatggtgcatgt |
102 |
Q |
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||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13111485 |
atatagcttgaattcaaacatgtctaccttaacccacatgggtgatggaacagcaagatgcatgtaagaacaacttaaaactttagataatggtgcatgt |
13111386 |
T |
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| Q |
103 |
aagaacagcatgatgctcgtattttcctcaagtagtataatgtctactcttagatcttgtaatttgaggatttcgacgagatgtgga |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
13111385 |
aagaacagcatgatgctcgtattttcctcaagtagtataatgtctactcttagatcctataatttgaggatttcgacgagatgtgga |
13111299 |
T |
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