View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18677_high_11 (Length: 205)
Name: NF18677_high_11
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18677_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 51105525 - 51105349
Alignment:
| Q |
14 |
agaatattaaagataacgagcctcttttgcagtataagataaataatcctgctttgctagctggaaattggtcccaaatttgtgcaacatgcaagattat |
113 |
Q |
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| T |
51105525 |
agaatattaaagataacgagcctcttttgcagtataagataaataatcctgctttgctagctggaaattggtcccaaatttgtgcaacacgcaagattat |
51105426 |
T |
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| Q |
114 |
caggcctcttcgtacgaaacattgtgctatatgtgatcaatgtgtggaacaatttgaccatcattgtccttggttgt |
190 |
Q |
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| T |
51105425 |
caggcctcttcgtacgaaacattgtgctatatgtgatcaatgtgtggaacaatttgaccatcattgtccttggttgt |
51105349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 51115025 - 51114908
Alignment:
| Q |
66 |
tttgctagctggaaattggtcccaaatttgtgcaacatgcaagattatcaggcctcttcgtacgaaacattgtgctatatgtgatcaatgtgtggaacaa |
165 |
Q |
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| T |
51115025 |
tttgctagctggaaattggtcccaactttgttcaacatgcaagattgttaggcctcttcgtgcgaaacattgttctacatgtgatcgttgtgttgaacaa |
51114926 |
T |
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| Q |
166 |
tttgaccatcattgtcct |
183 |
Q |
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| T |
51114925 |
tttgaccatcattgtcct |
51114908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 48038302 - 48038379
Alignment:
| Q |
31 |
gagcctcttttgcagtataagataaataatcctgctttgctagctggaaattggtcccaaatttgtgcaacatgcaag |
108 |
Q |
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| T |
48038302 |
gagcctcttttgaagattgagaaaaataatcctgctttgctagctggaaattggtcccaactttgtgcaacatgcaag |
48038379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 48038517 - 48038596
Alignment:
| Q |
107 |
agattatcaggcctcttcgtacgaaacattgtgctatatgtgatcaatgtgtggaacaatttgaccatcattgtccttgg |
186 |
Q |
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| T |
48038517 |
agattgtcagacctcttcgtgcaaaacattgttctacatgtgatcgttgtgtggagcaatttgaccatcattgtccttgg |
48038596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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