View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18677_high_2 (Length: 502)

Name: NF18677_high_2
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18677_high_2
NF18677_high_2
[»] chr7 (27 HSPs)
chr7 (19-374)||(4302861-4303217)
chr7 (254-412)||(11001063-11001223)
chr7 (279-364)||(1369529-1369614)
chr7 (276-374)||(8915450-8915547)
chr7 (310-373)||(1786420-1786483)
chr7 (256-374)||(1217489-1217605)
chr7 (254-374)||(13883012-13883133)
chr7 (414-497)||(24001029-24001111)
chr7 (414-497)||(35069722-35069804)
chr7 (414-497)||(42538448-42538530)
chr7 (414-497)||(41861675-41861759)
chr7 (414-497)||(5810941-5811023)
chr7 (415-497)||(44326180-44326261)
chr7 (276-373)||(11228432-11228528)
chr7 (414-497)||(5015396-5015478)
chr7 (414-497)||(5194248-5194330)
chr7 (414-497)||(42972853-42972935)
chr7 (414-497)||(9216303-9216384)
chr7 (414-497)||(43317444-43317526)
chr7 (415-497)||(10573751-10573832)
chr7 (415-497)||(43343641-43343722)
chr7 (415-497)||(44416951-44417032)
chr7 (414-497)||(24280613-24280695)
chr7 (414-497)||(40236920-40237002)
chr7 (415-497)||(4638216-4638297)
chr7 (257-370)||(27142353-27142462)
chr7 (429-497)||(27393277-27393344)
[»] chr2 (29 HSPs)
chr2 (19-374)||(35681662-35682014)
chr2 (161-374)||(31635882-31636095)
chr2 (19-169)||(31635548-31635698)
chr2 (280-371)||(280294-280385)
chr2 (254-407)||(33053109-33053263)
chr2 (307-374)||(27952654-27952721)
chr2 (314-390)||(2165624-2165702)
chr2 (254-412)||(32162204-32162363)
chr2 (414-497)||(1750415-1750497)
chr2 (413-497)||(19047157-19047240)
chr2 (414-497)||(12302270-12302352)
chr2 (414-497)||(16096748-16096830)
chr2 (277-374)||(22011095-22011192)
chr2 (415-496)||(43490419-43490499)
chr2 (414-497)||(43335780-43335862)
chr2 (318-390)||(23457389-23457462)
chr2 (276-352)||(18945663-18945739)
chr2 (414-497)||(30838633-30838715)
chr2 (414-497)||(43114558-43114640)
chr2 (415-497)||(11825671-11825752)
chr2 (415-497)||(41281991-41282072)
chr2 (428-496)||(14285691-14285758)
chr2 (415-450)||(4299483-4299518)
chr2 (414-497)||(16803969-16804051)
chr2 (414-497)||(16843251-16843333)
chr2 (414-497)||(18491706-18491788)
chr2 (276-389)||(36648585-36648700)
chr2 (414-450)||(966897-966933)
chr2 (413-461)||(34817829-34817876)
[»] chr8 (27 HSPs)
chr8 (19-321)||(37192759-37193063)
chr8 (279-371)||(23573249-23573341)
chr8 (248-409)||(2688855-2689014)
chr8 (314-374)||(22922179-22922239)
chr8 (414-497)||(11582767-11582849)
chr8 (414-497)||(36743500-36743582)
chr8 (415-497)||(42699259-42699340)
chr8 (411-497)||(45397314-45397399)
chr8 (303-374)||(22512377-22512448)
chr8 (414-497)||(29705363-29705445)
chr8 (415-497)||(20148762-20148843)
chr8 (415-497)||(26125637-26125718)
chr8 (415-497)||(30912579-30912660)
chr8 (415-497)||(42295197-42295278)
chr8 (318-374)||(26377776-26377832)
chr8 (414-494)||(30660762-30660841)
chr8 (414-497)||(42197452-42197534)
chr8 (414-496)||(2165981-2166062)
chr8 (415-497)||(29800967-29801048)
chr8 (414-497)||(2546997-2547079)
chr8 (414-497)||(35181517-35181599)
chr8 (276-370)||(24577811-24577905)
chr8 (414-497)||(5754904-5754986)
chr8 (414-497)||(34304789-34304871)
chr8 (415-497)||(33630010-33630091)
chr8 (414-450)||(19386633-19386669)
chr8 (425-497)||(31384676-31384747)
[»] chr1 (23 HSPs)
chr1 (276-412)||(10926906-10927045)
chr1 (254-368)||(13441924-13442036)
chr1 (254-389)||(23988913-23989050)
chr1 (308-373)||(8966030-8966095)
chr1 (276-390)||(10927814-10927930)
chr1 (414-497)||(5489777-5489859)
chr1 (414-497)||(43571103-43571185)
chr1 (278-373)||(40805571-40805666)
chr1 (414-497)||(48498979-48499061)
chr1 (409-497)||(38113212-38113299)
chr1 (414-494)||(50448280-50448359)
chr1 (414-497)||(44112678-44112760)
chr1 (414-497)||(48119629-48119711)
chr1 (415-497)||(7447828-7447908)
chr1 (276-361)||(31915247-31915332)
chr1 (450-497)||(4401364-4401411)
chr1 (414-497)||(35003295-35003377)
chr1 (414-497)||(37814779-37814861)
chr1 (308-374)||(31522576-31522642)
chr1 (414-471)||(14427348-14427404)
chr1 (414-497)||(23989540-23989623)
chr1 (414-450)||(41065154-41065190)
chr1 (414-446)||(45705826-45705858)
[»] chr5 (13 HSPs)
chr5 (254-368)||(21845225-21845335)
chr5 (255-374)||(18252109-18252228)
chr5 (414-497)||(41334680-41334762)
chr5 (414-497)||(7617134-7617216)
chr5 (414-497)||(2614666-2614748)
chr5 (414-497)||(18033983-18034065)
chr5 (314-369)||(19677629-19677684)
chr5 (414-497)||(22512306-22512388)
chr5 (414-497)||(32473411-32473493)
chr5 (415-497)||(5256997-5257078)
chr5 (415-496)||(25915006-25915085)
chr5 (414-497)||(33801470-33801552)
chr5 (414-489)||(33855068-33855142)
[»] chr4 (31 HSPs)
chr4 (276-368)||(22716324-22716416)
chr4 (276-368)||(22988801-22988893)
chr4 (280-374)||(6659658-6659751)
chr4 (276-374)||(7635000-7635098)
chr4 (276-370)||(10494634-10494728)
chr4 (414-497)||(1771283-1771365)
chr4 (414-494)||(12496957-12497036)
chr4 (314-374)||(13085423-13085483)
chr4 (414-497)||(25051694-25051776)
chr4 (414-497)||(41878407-41878489)
chr4 (414-496)||(21687007-21687088)
chr4 (414-496)||(27316731-27316812)
chr4 (414-494)||(27550310-27550389)
chr4 (414-497)||(711961-712043)
chr4 (414-497)||(27864565-27864647)
chr4 (414-497)||(55966363-55966445)
chr4 (415-497)||(43514703-43514784)
chr4 (414-497)||(23035981-23036063)
chr4 (414-497)||(28982839-28982921)
chr4 (414-497)||(33703142-33703224)
chr4 (415-497)||(39631102-39631184)
chr4 (298-368)||(9260297-9260367)
chr4 (415-497)||(27893859-27893940)
chr4 (414-496)||(28988474-28988555)
chr4 (415-497)||(43735744-43735825)
chr4 (409-497)||(48463467-48463554)
chr4 (414-497)||(17619169-17619251)
chr4 (414-497)||(35017734-35017815)
chr4 (415-497)||(43949818-43949900)
chr4 (414-494)||(960890-960969)
chr4 (414-450)||(49229727-49229763)
[»] chr6 (28 HSPs)
chr6 (255-374)||(18203126-18203244)
chr6 (253-374)||(22873499-22873620)
chr6 (276-412)||(34374024-34374162)
chr6 (276-374)||(22888965-22889063)
chr6 (256-390)||(12881715-12881850)
chr6 (276-374)||(22910508-22910606)
chr6 (314-374)||(3541947-3542007)
chr6 (314-374)||(30049617-30049677)
chr6 (314-374)||(30051904-30051964)
chr6 (414-497)||(7292748-7292830)
chr6 (414-497)||(26670026-26670108)
chr6 (414-497)||(7273352-7273434)
chr6 (414-497)||(9698350-9698432)
chr6 (276-370)||(12778690-12778782)
chr6 (414-497)||(7367550-7367632)
chr6 (415-497)||(30735984-30736065)
chr6 (414-497)||(13743238-13743320)
chr6 (414-497)||(13748738-13748820)
chr6 (414-497)||(30014344-30014426)
chr6 (415-497)||(24204004-24204085)
chr6 (415-497)||(27441544-27441625)
chr6 (414-497)||(26466800-26466882)
chr6 (315-365)||(18720019-18720069)
chr6 (414-497)||(3213401-3213483)
chr6 (313-368)||(8047663-8047718)
chr6 (316-374)||(32361109-32361167)
chr6 (414-491)||(31109245-31109321)
chr6 (346-374)||(11194398-11194426)
[»] scaffold0054 (3 HSPs)
scaffold0054 (254-374)||(49002-49122)
scaffold0054 (276-374)||(10361-10459)
scaffold0054 (254-374)||(37404-37523)
[»] chr3 (25 HSPs)
chr3 (254-374)||(365880-365999)
chr3 (415-497)||(27748565-27748646)
chr3 (414-497)||(4190282-4190364)
chr3 (414-497)||(25413682-25413764)
chr3 (414-497)||(36150131-36150213)
chr3 (414-497)||(54246165-54246247)
chr3 (254-374)||(8536660-8536780)
chr3 (410-497)||(40480746-40480832)
chr3 (414-497)||(42100689-42100771)
chr3 (414-497)||(47191043-47191124)
chr3 (414-497)||(54237097-54237179)
chr3 (413-497)||(42394436-42394519)
chr3 (414-497)||(24688419-24688501)
chr3 (414-497)||(45126945-45127027)
chr3 (414-497)||(46941054-46941136)
chr3 (415-497)||(53581875-53581956)
chr3 (326-374)||(3064068-3064116)
chr3 (414-497)||(40808866-40808948)
chr3 (417-497)||(29558251-29558330)
chr3 (414-497)||(53273701-53273783)
chr3 (415-497)||(1078229-1078309)
chr3 (278-360)||(2473000-2473084)
chr3 (414-497)||(9434125-9434207)
chr3 (328-373)||(24516698-24516743)
chr3 (424-496)||(11064740-11064811)
[»] scaffold0110 (1 HSPs)
scaffold0110 (314-374)||(45945-46005)
[»] scaffold0119 (1 HSPs)
scaffold0119 (414-497)||(686-768)
[»] scaffold0157 (1 HSPs)
scaffold0157 (414-494)||(23441-23520)
[»] scaffold0038 (1 HSPs)
scaffold0038 (413-497)||(112655-112738)
[»] scaffold0385 (1 HSPs)
scaffold0385 (414-497)||(11252-11334)
[»] scaffold0187 (2 HSPs)
scaffold0187 (414-497)||(14205-14287)
scaffold0187 (414-497)||(24533-24615)
[»] scaffold0003 (1 HSPs)
scaffold0003 (415-497)||(45736-45817)
[»] scaffold0024 (2 HSPs)
scaffold0024 (276-374)||(145444-145542)
scaffold0024 (276-361)||(144197-144282)


Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 4302861 - 4303217
Alignment:
Q  19 tgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattct 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4302861 tgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattct 4302960  T
Q  118 tatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4302961 tatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgac 4303060  T
Q  218 agctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303061 agctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt 4303160  T
Q  318 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303161 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 4303217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 254 - 412
Target Start/End: Complemental strand, 11001223 - 11001063
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 353  Q
    ||||||||||| || || ||  ||||| ||||||||||||||  |||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||    
T  11001223 caatgggatccaggaggatgatctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagagg 11001124  T
Q  354 tggaggagactgatgtagga--gtttcctttgtaattttctatttcagcctaattttatta 412  Q
    ||||||||||||||||||||  |||||||| ||| |||  |||||||||| ||||||||||    
T  11001123 tggaggagactgatgtaggagggtttccttagtattttattatttcagcccaattttatta 11001063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 1369529 - 1369614
Alignment:
Q  279 ttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagact 364  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  1369529 ttgttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagact 1369614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 374
Target Start/End: Complemental strand, 8915547 - 8915450
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||| ||||| || |||||||||||| |||||||||||||||||||||    
T  8915547 ctcttgttcatcggaggagtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggag 8915450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 1786420 - 1786483
Alignment:
Q  310 agctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 373  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  1786420 agctctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtagga 1786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 374
Target Start/End: Complemental strand, 1217605 - 1217489
Alignment:
Q  256 atgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtg 355  Q
    ||||||||| || |||||  |||||||| |||||||||  |||||||||||  || ||||||||||||| | ||||||||| |||||||||||| |||||    
T  1217605 atgggatccaggagggtggtctcttgttaattggaggacacgacatgcatga-aatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtg 1217508  T
Q  356 gaggagactgatgtaggag 374  Q
    ||||||||||||| |||||    
T  1217507 gaggagactgatgcaggag 1217489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 374
Target Start/End: Complemental strand, 13883133 - 13883012
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacat--gcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcaga 351  Q
    ||||||||||| || |||||  |||||||| |||||||||| | ||||  ||||| ||| |||||||| | |||||||||||||| |||||||||| |||    
T  13883133 caatgggatccaggagggtggtctcttgtttattggaggagccaacatatgcatgagaatctctttattagaatgagaactcggg-tcgagttctttaga 13883035  T
Q  352 ggtggaggagactgatgtaggag 374  Q
    |||||| |||||||||| |||||    
T  13883034 ggtggacgagactgatgcaggag 13883012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 24001111 - 24001029
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  24001111 gaaaatgttacatgaacaccctttattcctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 24001029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 35069722 - 35069804
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||| |||||||| |||||| ||||| ||||||| ||||||||| ||||||||| ||||||||||||||    
T  35069722 gaaaatgttacatgaacactctttattcctacacc-tcattgtacacctcatgtattagggatattttggtaagttcatctcac 35069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 42538530 - 42538448
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  42538530 gaaaatgttacatgaacaccctttattcctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 42538448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 41861675 - 41861759
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtat--tagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||| |||||||  ||||||||||||| |||||| |||||||    
T  41861675 gaaaatgttacatgaacaccctttattcatacaccc-aattatacaccctatgtattatagagatattttggtaagtttatctcac 41861759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 5811023 - 5810941
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||| |||||||||||| ||||||| |||| |||||| ||| |||||| ||||||||| ||||||||||||||    
T  5811023 gaaaatgttacatgaccaccctttattcctacaccc-cattgtacaccctatatattagggatattttgataagttcatctcac 5810941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 44326180 - 44326261
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| || ||||||||||||||||||| || |||| ||||||| || |||||| ||||||||| ||||||||||||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcc-cattgtacacctcatatattagggatattttggtaagttcatctcac 44326261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 373
Target Start/End: Original strand, 11228432 - 11228528
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 373  Q
    ||||||||||||  |||||||  ||||||||||||| ||||||| | ||||||||||||||  | ||||||| ||||| |||| ||||||||||||||    
T  11228432 ctcttgttcattataggagtcatcatgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtagga 11228528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 5015396 - 5015478
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||| |||||||  ||||| | |||| ||||||| ||||||||| ||||||||| ||||||||||||||    
T  5015396 gaaaatgttacatgaacactctttatttctacactc-cattgtacacctcatgtattagggatattttggtaagttcatctcac 5015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 5194330 - 5194248
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||| |||||||||||| ||||||| |||||| ||||| |||  ||||||||| ||| ||||||||||    
T  5194330 gaaaatgttacatgaacaccatttattcataca-cctcattgtacaccctatgttttaaggatattttgataaattcatctcac 5194248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 42972853 - 42972935
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||||  |||||| ||||||||| ||||| | |||| ||||||| ||||||||| ||||||||| ||||||||||||||    
T  42972853 gaaaatgttacctgaacatcctttattcctacactc-cattgtacacctcatgtattagggatattttggtaagttcatctcac 42972935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 9216303 - 9216384
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| || | ||| ||| ||||||  ||| ||||||||||||||| ||||||||||||||    
T  9216303 gaaaatgttacatgaacaccctttattcctatatcct-attgtacaccc-atgcattagagatattttggtaagttcatctcac 9216384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 43317444 - 43317526
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||| |||||||||||| ||||||| |||| | ||||  |||| ||||||||| ||| ||||||||||    
T  43317444 gaaaatgttacatgaacaccatttattcataca-cctcattgtacatcctatgctttagggatattttgataaattcatctcac 43317526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 10573751 - 10573832
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| || ||||||||||||||||||| ||| ||| ||||||  |||||||||  |||||||| ||| ||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcct-attgtacaccccatgtattaggaatattttggtaaattcatctcac 10573832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 43343722 - 43343641
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||| | ||||||  |||||||| ||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccct-attgtacaccccatgtattagggatattttgataagttcatctcac 43343641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 44417032 - 44416951
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||| | ||||||  |||||||| ||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccct-attgtacaccccatgtattagggatattttgataagttcatctcac 44416951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 24280695 - 24280613
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||||  ||||||||||||||||||||||||| ||| |||| |  ||| | |||| |||||||| ||| ||||||||||    
T  24280695 gaaaatgttacgtgaacaccctttattcatacaccct-attctacatcccatgcactagaaatattttggtaaattcatctcac 24280613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 40236920 - 40237002
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||| ||| ||| ||||||  ||| ||||| || |||||| ||| ||||||||||    
T  40236920 gaaaatgttacatgaacaccctttaatcatacatcct-attgtacaccccatgcattagggacattttggtaatttcatctcac 40237002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 4638297 - 4638216
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||| ||||||||||||| |  ||| ||||||  || |||||  ||||||||| ||||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactc-aattgtacaccccatatattatggatattttggtaagttcatctcac 4638216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 370
Target Start/End: Original strand, 27142353 - 27142462
Alignment:
Q  257 tgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctc-tttatcaaaatgagaactcgggatcgagttcttcagaggtg 355  Q
    |||||| ||||||||||| ||  ||||||||||| ||| | |||||||| |||||||| ||||||| ||| |||||| ||| |||| ||||||    ||     
T  27142353 tgggattcgggtgggtgttcttctgttcattggaagagccaacatgcat-ggaagctcttttatcataataagaacttggggtcgatttcttc----gta 27142447  T
Q  356 gaggagactgatgta 370  Q
    |||||||||||||||    
T  27142448 gaggagactgatgta 27142462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 497
Target Start/End: Complemental strand, 27393344 - 27393277
Alignment:
Q  429 acaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||||||| |||| ||| ||| |||||  |||||||||| ||||||||  ||||||||||||||    
T  27393344 acaccctttattcctacatcct-attgtacactctatgtattagggatatttttgtaagttcatctcac 27393277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 35681662 - 35682014
Alignment:
Q  19 tgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattct 117  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||||||    
T  35681662 tgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattct 35681761  T
Q  118 tatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgac 217  Q
    || ||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||||| |    
T  35681762 tacacttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccttgctcagtggc 35681861  T
Q  218 agctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt 317  Q
     ||| |||||||||||| ||||  ||||  ||||||||||||||||| |||||     ||||||||||||| ||||||| |||||||| | |||||||||    
T  35681862 tgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggt----ctcttgttcattgaaggagtcaacatgcatagaaagctcttt 35681957  T
Q  318 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    |||| || ||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  35681958 atcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggag 35682014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 161 - 374
Target Start/End: Original strand, 31635882 - 31636095
Alignment:
Q  161 ctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatggg 260  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||    
T  31635882 ctaacttatatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatggg 31635981  T
Q  261 atccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggagga 360  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  31635982 atccgggtgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggagga 31636081  T
Q  361 gactgatgtaggag 374  Q
    ||||||||||||||    
T  31636082 gactgatgtaggag 31636095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 31635548 - 31635698
Alignment:
Q  19 tgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattct 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  31635548 tgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcta-tgtgttggtttcatttattct 31635646  T
Q  118 tatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttat 169  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  31635647 tatacttcaagtacaaaatgatcaggcatcacttaacggtgctctaacttat 31635698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 280385 - 280294
Alignment:
Q  280 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag 371  Q
    |||||||||||||| || ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  280385 tgttcattggaggattcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtag 280294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 254 - 407
Target Start/End: Original strand, 33053109 - 33053263
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 353  Q
    ||||||||| | || |||||  |||||||| ||| |||||||||||||| ||| |||||||||||| | ||| ||||| |||| ||||||||||||||||    
T  33053109 caatgggattcaggagggtggtctcttgtttattagaggagtcgacatgaatgagaagctctttattagaataagaac-cggggtcgagttcttcagagg 33053207  T
Q  354 tggaggagactgatgtag--gagtttcctttgtaattttctatttcagcctaattt 407  Q
    ||||||||||||||||||  | |||||||| ||| |||  ||||||||||||||||    
T  33053208 tggaggagactgatgtagaagggtttccttagtattttattatttcagcctaattt 33053263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 27952721 - 27952654
Alignment:
Q  307 ggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27952721 ggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 27952654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 2165624 - 2165702
Alignment:
Q  314 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag--gagtttcctttgtaatttt 390  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  2165624 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagtaatttt 2165702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 412
Target Start/End: Complemental strand, 32162363 - 32162204
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 353  Q
    ||||||||||  || |||||  |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||  | | ||||| |||||||     
T  32162363 caatgggatcaaggagggtggtctcttgttcattagag-agtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagaga 32162265  T
Q  354 tggaggagactgatgtaggag--tttcctttgtaattttctatttcagcctaattttatta 412  Q
    ||||||||||| ||||| |||  ||||||| | | |||  |||||||||  ||||||||||    
T  32162264 tggaggagactaatgtaagaggatttccttagaattttattatttcagctcaattttatta 32162204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 1750415 - 1750497
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| ||||||| |||| |||||| |||||||||| ||||||||  ||||||||||||||    
T  1750415 gaaaatgttacatgaacaccctttattcctacaccc-cattgtacaccctatgtattagggatatttttgtaagttcatctcac 1750497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 497
Target Start/End: Original strand, 19047157 - 19047240
Alignment:
Q  413 agaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||||| ||||||||||||||||| ||||  | |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  19047157 agaaaatgttacatgaacaccctttattcctacattc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 19047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 12302352 - 12302270
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||  ||||||| |||| |||||| |||||||||| ||||||||  ||||||||||||||    
T  12302352 gaaaatgttacatgaacaccctttatttctacaccc-cattgtacaccctatgtattagggatatttttgtaagttcatctcac 12302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 16096748 - 16096830
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||  ||||||||| ||||||||| | |||| |||||||    
T  16096748 gaaaatgttacatgaacaccctttattcctacaccc-cattatacaccccatgtattagggatattttggtgagttaatctcac 16096830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 22011095 - 22011192
Alignment:
Q  277 tcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    |||||||||| | ||||||| |||| |||| |||  ||||||| | ||||||||||| || |||||||||| |||||||||||||| ||||| |||||    
T  22011095 tcttgttcatcgaaggagtcaacatacatgagaaattctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggag 22011192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 496
Target Start/End: Complemental strand, 43490499 - 43490419
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctca 496  Q
    ||||||||| ||||||||||||||||| |||| || |||| |||||  |||||||||| ||||||||| |||||||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcc-cattgtacactctatgtattagggatattttggtaagttcatctca 43490419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 43335862 - 43335780
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||||||||||| | ||||||| |||||| ||||| |||| |  ||||||||| ||||||||| ||||||||||||||    
T  43335862 gaaaatgttatatgaacatcatttattcctacacc-tcattgtacatcccatgtattagggatattttggtaagttcatctcac 43335780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 23457389 - 23457462
Alignment:
Q  318 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga-gtttcctttgtaatttt 390  Q
    |||| ||||||||||||||   |||||||||||||||||||| ||||||||||||| |||| ||| ||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtaggaggttttcttagtaatttt 23457462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 18945663 - 18945739
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagag 352  Q
    ||||||||||||| ||||||  ||||| ||| ||| ||||| |||| |||||||| ||||||||||||| |||||||    
T  18945663 ctcttgttcattgcaggagttaacatgaatgagaaactcttaatcagaatgagaattcgggatcgagtttttcagag 18945739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 30838633 - 30838715
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||  |||| | | ||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  30838633 gaaaatgttacatgaacaccctttatttctacatctt-attgtacaccccatgtattagggatattttggtaagttcatctcac 30838715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 43114558 - 43114640
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||  ||| ||||| || |||||| ||| ||||||||||    
T  43114558 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacaccccatgcattagggacattttggtaatttcatctcac 43114640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 11825752 - 11825671
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| |||||||||||||| ||||||||||| ||| ||||||  ||| ||||| || |||||| ||| ||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccct-attgtacaccccatgcattagggacattttggtaatttcatctcac 11825671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 41282072 - 41281991
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| |||||||||||||| ||||||||||| ||| ||||||  ||| ||||| || |||||| ||| ||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccct-attgtacaccccatgcattagggacattttgataatttcatctcac 41281991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 14285691 - 14285758
Alignment:
Q  428 aacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctca 496  Q
    ||||||||||| ||||||||||| ||| |||||| ||| ||||| |||||||||| ||| |||||||||    
T  14285691 aacaccctttaatcatacaccct-attgtacaccctatatattaaagatattttggtaaattcatctca 14285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 450
Target Start/End: Complemental strand, 4299518 - 4299483
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccct 450  Q
    |||||||||||||||||||||||| |||||||||||    
T  4299518 aaaatgttatatgaacaccctttaatcatacaccct 4299483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 16803969 - 16804051
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| |||| |  ||| ||||| || |||||| ||| ||||||||||    
T  16803969 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacatcccatgcattagggacattttgataatttcatctcac 16804051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 16843251 - 16843333
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| |||| |  ||| ||||| || |||||| ||| ||||||||||    
T  16843251 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacatcccatgcattagggacattttgataatttcatctcac 16843333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 18491706 - 18491788
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||| ||| ||||   | |||||| ||| ||||||||||    
T  18491706 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacacctcatgcattaagaacattttggtaaattcatctcac 18491788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 389
Target Start/End: Original strand, 36648585 - 36648700
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga- 373  Q
    ||||| ||||||||| |||||  ||||||||| |||| |||| |||| ||  |||||| ||  |||||||||||| || ||||||||||| ||||||||     
T  36648585 ctcttattcattggaagagtcatcatgcatgg-aagcacttttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatgtaggag 36648683  T
Q  374 -gtttcctttgtaattt 389  Q
     |||||||| |||||||    
T  36648684 ggtttccttagtaattt 36648700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 450
Target Start/End: Complemental strand, 966933 - 966897
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccct 450  Q
    |||||||||| |||||||||||||| |||||||||||    
T  966933 gaaaatgttacatgaacaccctttaatcatacaccct 966897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 461
Target Start/End: Complemental strand, 34817876 - 34817829
Alignment:
Q  413 agaaaatgttatatgaacaccctttattcatacaccctcattatacacc 461  Q
    ||||||||||| |||||||||||||||||| ||| ||||||| ||||||    
T  34817876 agaaaatgttacatgaacaccctttattcacaca-cctcattgtacacc 34817829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 37192759 - 37193063
Alignment:
Q  19 tgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattct 117  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |    ||||||||||||||||||||||     
T  37192759 tgcatgttattaaacctttacttggacttcatgaaaaaggatattggttattctctcaaataaaaagggatccacttactgtgttggtttcattcattcc 37192858  T
Q  118 tatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgac 217  Q
    |||||||||||||||| ||| | ||||||||||||||| ||||||| ||| |||||||||||||||||  ||||| |||||||||||||||| ||||| |    
T  37192859 tatacttcaagtacaacatggtcaggcatcacttaacaatgctctagcttgtatagaattatcaagtgcgtctgcaattgttggtacattgctcagtggc 37192958  T
Q  218 agctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttg-ttcattggaggagtcgacatgcatgggaagctctt 316  Q
     ||| |||||||||||| ||||| ||||||||||  ||||||||||| || || ||| |||||| ||  ||||||||||| ||||||||||  |||||||    
T  37192959 tgctttgtccataaaaagggaccctcacagttcactcaatgggatccaggaggatgttctcttgtttttttggaggagtcaacatgcatggagagctctt 37193058  T
Q  317 tatca 321  Q
     ||||    
T  37193059 catca 37193063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 23573249 - 23573341
Alignment:
Q  279 ttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag 371  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||    
T  23573249 ttgttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtag 23573341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 248 - 409
Target Start/End: Original strand, 2688855 - 2689014
Alignment:
Q  248 ttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttctt 347  Q
    |||| ||||||||||||  | |||||  ||| ||||||||||||||||| ||||||||||||| ||||  || | |||||||||||| ||||||||||||    
T  2688855 ttcacccaatgggatccatgagggtgatctcatgttcattggaggagtcaacatgcatgggaaactct--attagaatgagaactcgtgatcgagttctt 2688952  T
Q  348 cagaggtggaggagactgatgtagga--gtttcctttgtaattttctatttcagcctaatttta 409  Q
    || |||||||||||||| ||||||||  ||||| || |||  ||| ||||||||||||||||||    
T  2688953 cataggtggaggagactcatgtaggagggtttctttagta--tttttatttcagcctaatttta 2689014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 22922239 - 22922179
Alignment:
Q  314 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22922239 ctttatgaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 22922179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 11582767 - 11582849
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  11582767 gaaaatgttacatgaacaccctttattcctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 11582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 36743582 - 36743500
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  36743582 gaaaatgttacatgaacaccctttattcctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 36743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 42699259 - 42699340
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||  ||||||||  ||||||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccc-cattgtacaccttatgtattatggatatttttgtaagttcatctcac 42699340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 497
Target Start/End: Original strand, 45397314 - 45397399
Alignment:
Q  411 taagaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||||||  |||||||||||||||| ||||||| |||| |||||| |||||||||| ||||||||  ||||||||||||||    
T  45397314 taagaaaatgttacgtgaacaccctttattcctacaccc-cattctacaccctatgtattagggatatttttgtaagttcatctcac 45397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 22512448 - 22512377
Alignment:
Q  303 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    |||||||||||  |||||| ||| |||||||||| |||||||||| |||||||||||||||||||| |||||    
T  22512448 catgggaagcttcttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggag 22512377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 29705363 - 29705445
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||  ||||||| |||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  29705363 gaaaatgttacatgaacaccctttatttctacaccc-cattgtacaccccatgtattagggatattttgataagttcatctcac 29705445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 20148762 - 20148843
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| || ||||||||||||||||||| || |||| ||||||| || |||||| ||||||||| ||||||||||||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcc-cattgtacacctcatatattagggatattttggtaagttcatctcac 20148843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 26125637 - 26125718
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| || |||||||||||||||||||  | |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 26125718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 30912660 - 30912579
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||||||||||| ||||||| |||| ||||| | ||||||||| | ||||||| ||||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccc-cattgtacacttcatgtattaggggtattttggtaagttcatctcac 30912579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 42295197 - 42295278
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||||||||||| |||| ||||||| |||||   ||||||||| ||||||||| ||||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctaca-cctcattgtacactccatgtattagggatattttggtaagttcatctcac 42295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 26377776 - 26377832
Alignment:
Q  318 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggag 26377832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 30660841 - 30660762
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatct 494  Q
    |||||||||| ||||||||||||||||  |||| || |||| |||||| |||||||||| ||||||||| |||||||||||    
T  30660841 gaaaatgttacatgaacaccctttatttctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatct 30660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 42197534 - 42197452
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||| ||||||| ||||||| ||||  ||||  |||||||||| ||||||||| ||||||||||||||    
T  42197534 gaaaatgttacatgaacaccatttattcctacaccc-cattgcacacactatgtattagggatattttggtaagttcatctcac 42197452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 414 - 496
Target Start/End: Complemental strand, 2166062 - 2165981
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctca 496  Q
    |||||| ||| ||||||||| ||||||| ||||||| |||| || |||  ||||||||||||||||||| |||||||||||||    
T  2166062 gaaaatattacatgaacaccatttattcctacaccc-cattgtataccccatgtattagagatattttggtaagttcatctca 2165981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 29801048 - 29800967
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| || |||||| |||||||||||| || |||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcc-cattgtacaccccatgtattagggatattttggtaagttcatctcac 29800967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 2546997 - 2547079
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||| |||||||  ||||| | |||| ||||||| ||||||||| ||||||||  ||||||||||||||    
T  2546997 gaaaatgttacatgaacactctttatttctacactc-cattgtacacctcatgtattagggatattttagtaagttcatctcac 2547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 35181517 - 35181599
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||  ||| ||||| || |||||| ||| ||||||||||    
T  35181517 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacaccccatgcattagggacattttggtaatttcatctcac 35181599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 24577905 - 24577811
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgta 370  Q
    |||||||| |||||||||||  | ||||| | |||| ||| ||||| || ||||||||  | |||| ||||||||| ||||||||||||||||||    
T  24577905 ctcttgtttattggaggagtaaatatgcaagcgaagttctgtatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatgta 24577811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 5754904 - 5754986
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||| ||||||| |||| || |||| |||| |  || |||||| ||||||||| ||||||||||||||    
T  5754904 gaaaatgttacatgaacaccttttattcctacatcc-cattgtacatcccatatattagggatattttggtaagttcatctcac 5754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 34304789 - 34304871
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||| |||||| ||||||||||| ||| ||||||  ||| ||||| || |||||| ||| ||||||||||    
T  34304789 gaaaatgttacatgaacatcctttaatcatacaccct-attgtacaccccatgcattagggacattttggtaatttcatctcac 34304871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 33630091 - 33630010
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| | |||||||||||| ||||||| ||||||| |||||| |||| ||||| || |||||  ||| ||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcataca-cctcattgtacaccctatgcattagggacattttagtaatttcatctcac 33630010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 450
Target Start/End: Complemental strand, 19386669 - 19386633
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccct 450  Q
    |||||||||| |||||||||||||| |||||||||||    
T  19386669 gaaaatgttacatgaacaccctttaatcatacaccct 19386633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 497
Target Start/End: Original strand, 31384676 - 31384747
Alignment:
Q  425 atgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||||||||||| ||||  || ||| ||||||  |||||||||  |||||||| ||||||||||||||    
T  31384676 atgaacaccctttattcttacattct-attgtacaccccatgtattaggaatattttggtaagttcatctcac 31384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 276 - 412
Target Start/End: Original strand, 10926906 - 10927045
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag---g 372  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||   |    
T  10926906 ctcttattcattggaggagtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggatg 10927005  T
Q  373 agtttcctttgtaattttctatttcagcctaattttatta 412  Q
    | |||| || |||||||| |||||||| ||||||||||||    
T  10927006 attttcattagtaattttatatttcagtctaattttatta 10927045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 254 - 368
Target Start/End: Complemental strand, 13442036 - 13441924
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 353  Q
    ||||||||||| || || ||  |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||   |||||| |||||||||||    
T  13442036 caatgggatccaggaggatgatctcttgctcattggaggagtcaacatgcatgggaagctctttatcagaatgagaact--tgatcgaattcttcagagg 13441939  T
Q  354 tggaggagactgatg 368  Q
    |||||||||||||||    
T  13441938 tggaggagactgatg 13441924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 389
Target Start/End: Original strand, 23988913 - 23989050
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 353  Q
    ||||||||||| |  |||||  |||||| |||||| ||||||  ||||||| ||||||||||||| ||||| ||||||||  | ||||||||||||||||    
T  23988913 caatgggatccagaagggtgatctcttgctcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagagg 23989012  T
Q  354 tggaggagactgatgtagga--gtttcctttgtaattt 389  Q
    || |||||||| ||||||||  |||||||| |||||||    
T  23989013 tgtaggagactaatgtaggagggtttccttagtaattt 23989050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 8966095 - 8966030
Alignment:
Q  308 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 373  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  8966095 gaagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtagga 8966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 276 - 390
Target Start/End: Original strand, 10927814 - 10927930
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga-- 373  Q
    |||||||| |||| | ||||| || |||||| ||| |||||||| | |||||||||||||| |||||||||||||| ||||||||||||| |||||||      
T  10927814 ctcttgtttattgtaagagtcaacttgcatgagaaactctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggagg 10927913  T
Q  374 gtttcctttgtaatttt 390  Q
    |||||||| ||||||||    
T  10927914 gtttccttagtaatttt 10927930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 5489777 - 5489859
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  5489777 gaaaatgttacatgaacaccctttattcctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 5489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 43571185 - 43571103
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||||| ||||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  43571185 gaaaatgttacatgaacaccctttattcctacacc-tcattgtacaccccatgtattagggatattttggtaagttcatctcac 43571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 278 - 373
Target Start/End: Original strand, 40805571 - 40805666
Alignment:
Q  278 cttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 373  Q
    ||||||||| |||||||||  |||||||| ||| ||| |||||| ||  |||||||||| |||| ||||| | |||||||||||||||||||||||    
T  40805571 cttgttcatcggaggagtcatcatgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtagga 40805666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 48499061 - 48498979
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||| |||||||  ||||| | |||| ||||||| ||||||||| ||||||||| ||||||||||||||    
T  48499061 gaaaatgttacatgaacactctttatttctacactc-cattgtacacctcatgtattagggatattttggtaagttcatctcac 48498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 497
Target Start/End: Complemental strand, 38113299 - 38113212
Alignment:
Q  409 attaagaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||  ||| ||||  || |||||| ||| ||||||||||    
T  38113299 attaggaaaatgttatatgaacaccctttaatcatacaccct-attgtacaccccatgcattaatgacattttggtaaattcatctcac 38113212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 50448359 - 50448280
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatct 494  Q
    |||||||||| |||||||| |||||||  ||||| | |||| ||||||||||||||||| ||||||||  |||||||||||    
T  50448359 gaaaatgttacatgaacactctttatttctacactc-cattgtacaccttatgtattagggatatttttgtaagttcatct 50448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 44112678 - 44112760
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||  ||| ||||| || |||||| ||| ||||||||||    
T  44112678 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacaccccatgcattagggacattttggtaatttcatctcac 44112760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 48119629 - 48119711
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||  ||| ||||  ||||||||| ||| ||||||||||    
T  48119629 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacaccccatgcattaaggatattttggtaaattcatctcac 48119711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 7447828 - 7447908
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||| ||||||||| |||| || |||| ||||||  |||||||| |||||||||| ||||||||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcc-cattgtacaccc-atgtattacagatattttgataagttcatctcac 7447908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 361
Target Start/End: Original strand, 31915247 - 31915332
Alignment:
Q  276 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggag 361  Q
    ||||||||||||||||||||| ||| || |||| || ||||| || | || ||||||||||| | ||||||||||||||||||||||    
T  31915247 ctcttgttcattggaggagtcaacaatgaatggaaaactctt-attagaacgagaactcggggttgagttcttcagaggtggaggag 31915332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 4401364 - 4401411
Alignment:
Q  450 tcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  4401364 tcattgtacaccccatgtattagagatattttggtaagttcatctcac 4401411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 35003295 - 35003377
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||  ||  ||||  ||||||||| ||| ||||||||||    
T  35003295 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacaccccatacattaaggatattttggtaaattcatctcac 35003377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 37814779 - 37814861
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| || |||||||||||||||||||  |||||| ||||||  ||||||||  ||||||||| ||| ||||| ||||    
T  37814779 gaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcatttcac 37814861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 31522576 - 31522642
Alignment:
Q  308 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||| |||||| || |||||||||   |||||||||||||||||||| | | ||||||||||||    
T  31522576 gaagctcattatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggag 31522642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 471
Target Start/End: Original strand, 14427348 - 14427404
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtatta 471  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||| ||| ||||    
T  14427348 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 23989623 - 23989540
Alignment:
Q  414 gaaaatgttatatgaacaccc-tttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||| ||||||||||||| |  ||| || ||| |||||||||| ||||||||| ||| || |||||||    
T  23989623 gaaaatgttacatgaacacccttttattcatacactc-aattgtataccctatgtattagggatattttggtaaatttatctcac 23989540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 450
Target Start/End: Original strand, 41065154 - 41065190
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccct 450  Q
    |||||||||| |||||||||||||| |||||||||||    
T  41065154 gaaaatgttacatgaacaccctttaatcatacaccct 41065190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 45705826 - 45705858
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcataca 446  Q
    ||||||||||||||||||||||||| |||||||    
T  45705826 gaaaatgttatatgaacaccctttaatcataca 45705858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 254 - 368
Target Start/End: Complemental strand, 21845335 - 21845225
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 353  Q
    ||||||||||||||||| |    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  21845335 caatgggatccgggtggtt----tcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagagg 21845240  T
Q  354 tggaggagactgatg 368  Q
    ||||  |||||||||    
T  21845239 tggaacagactgatg 21845225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 374
Target Start/End: Original strand, 18252109 - 18252228
Alignment:
Q  255 aatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggt 354  Q
    |||||||| | || |||||  ||||||| ||||||||||||| |||||||||| ||||| ||||||| |||||||||||||| || ||||||||||||||    
T  18252109 aatgggattcaggagggtggtctcttgtccattggaggagtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggt 18252208  T
Q  355 ggaggagactgatgtaggag 374  Q
     |||||| |||||| |||||    
T  18252209 agaggaggctgatgcaggag 18252228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 41334762 - 41334680
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  41334762 gaaaatgttacatgaacaccctttattcatacacc-tcattatacaccctatgtattagggatattttggtaagttcatctcac 41334680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 7617134 - 7617216
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||||  ||||||||| ||||||||| ||||||||||||||    
T  7617134 gaaaatgttacatgaacaccctttattcatacactc-cattatacaccccatgtattagggatattttggtaagttcatctcac 7617216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 2614748 - 2614666
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  2614748 gaaaatgttacatgaacaccctttattcctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 2614666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 18033983 - 18034065
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| ||||| | |||| |||||| |||||||||| ||||||||  ||||||||||||||    
T  18033983 gaaaatgttacatgaacaccctttattcctacactc-cattgtacaccctatgtattagggatatttttgtaagttcatctcac 18034065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 19677684 - 19677629
Alignment:
Q  314 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgt 369  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19677684 ctttataaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgt 19677629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 22512306 - 22512388
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| ||||| | |||| |||||   ||||||||| ||||||||| ||||||||||||||    
T  22512306 gaaaatgttacatgaacaccctttattcctacactc-cattgtacactccatgtattagggatattttggtaagttcatctcac 22512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 32473493 - 32473411
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||| ||| ||| ||||||  ||| ||||| ||||||||| ||| ||||||||||    
T  32473493 gaaaatgttacatgaacaccctttaatcataca-ccttattgtacaccacatgcattagggatattttggtaatttcatctcac 32473411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 5256997 - 5257078
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| || |||||| |||||||||||| || |||| ||||||  ||||||||| ||||||||| ||| ||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcc-cattgtacaccccatgtattagggatattttggtaatttcatctcac 5257078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 496
Target Start/End: Complemental strand, 25915085 - 25915006
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctca 496  Q
    ||||||||| ||||||||||||||||| |||| ||||||| ||||||  |||||||||| |||||||  || ||||||||||    
T  25915085 aaaatgttacatgaacaccctttattcctaca-cctcattgtacacccaatgtattaga-atatttttgtaggttcatctca 25915006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 33801470 - 33801552
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||| ||||||||  ||||||| |||| |||||   ||||||||| ||||||||  ||||||||||||||    
T  33801470 gaaaatgttacatgaacatcctttatttctacaccc-cattgtacactccatgtattagggatattttagtaagttcatctcac 33801552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 489
Target Start/End: Complemental strand, 33855142 - 33855068
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagtt 489  Q
    |||||||||| ||||||||||||||||| ||||||| |||| ||||||  |||||||||  | |||||| ||||||    
T  33855142 gaaaatgttacatgaacaccctttattcctacaccc-cattgtacaccccatgtattaggaacattttggtaagtt 33855068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 22716324 - 22716416
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 368  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22716324 ctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22716416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 22988893 - 22988801
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 368  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22988893 ctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22988801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 374
Target Start/End: Complemental strand, 6659751 - 6659658
Alignment:
Q  280 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||| ||||||||||| | || |||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||||||||    
T  6659751 tgttctttggaggagtcaatattcatgggaagctctttatcaagatgagaatttggg-tcgagttcttcagaggtagaggagactgatgtaggag 6659658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 7635000 - 7635098
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||||| ||||||||| ||||||||||| |||| ||||| | |||||||| | ||| ||||||||||||||| |||||||||||||||| ||||    
T  7635000 ctcttgttcatcggaggagtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatgtgggag 7635098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 10494634 - 10494728
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgta 370  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  || |||||| | | |||||||||||||| || ||| |||||||||||    
T  10494634 ctcttgttcattggaggagtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgta 10494728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 1771365 - 1771283
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| ||||||| |||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  1771365 gaaaatgttacatgaacaccctttattcctacaccc-cattgtacaccccatgtattagagatattttgataagttcatctcac 1771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 12496957 - 12497036
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatct 494  Q
    |||||||||||||||||||||||||||| ||||| | |||| |||| |  ||||||||||||||||||| |||||||||||    
T  12496957 gaaaatgttatatgaacaccctttattcctacactc-cattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 13085483 - 13085423
Alignment:
Q  314 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  13085483 ctttatcaagatgagaactcggggtcgagttcttcagagatggaagagactgatgtaggag 13085423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 25051694 - 25051776
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||| | |||||||| |||||||| ||||||| |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  25051694 gaaaatgtcacatgaacacactttattcctacaccc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 25051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 41878407 - 41878489
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||| ||||||||||||| ||||||| |||||| |||  ||||| ||||||||| ||||||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcataca-cctcattgtacaccctatccattagggatattttgataagttcatctcac 41878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 21687007 - 21687088
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctca 496  Q
    |||||||||| ||||||| ||||||||  ||||||| ||||||||| ||||||||||||| |||||||  |||||||||||||    
T  21687007 gaaaatgttacatgaacatcctttatttttacaccc-cattatacatcttatgtattagaaatattttagtaagttcatctca 21687088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 496
Target Start/End: Complemental strand, 27316812 - 27316731
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctca 496  Q
    |||||||||| | ||||||||||||||| |||||| ||||||||||||  ||||||||  ||||||||| |||||||||||||    
T  27316812 gaaaatgttaaacgaacaccctttattcctacacc-tcattatacaccccatgtattaaggatattttggtaagttcatctca 27316731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 27550310 - 27550389
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatct 494  Q
    |||||||||| ||||||||||||||||  ||||| | |||| ||||||| ||||||||| ||||||||| |||||||||||    
T  27550310 gaaaatgttacatgaacaccctttatttctacactc-cattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 711961 - 712043
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| |||||| |||| ||||  ||||||||| ||| ||||||||||    
T  711961 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacaccctatgcattaaggatattttggtaaattcatctcac 712043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 27864565 - 27864647
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| || |||||| |||||||||||| || |||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  27864565 gaaaatgttacataaacaccatttattcatacatcc-cattgtacaccccatgtattagggatattttggtaagttcatctcac 27864647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 55966445 - 55966363
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| || ||||||||||||||||||| || |||| |||| |  ||||||||| ||||||||| ||||||||||||||    
T  55966445 gaaaatgttacataaacaccctttattcatacatcc-cattgtacatcccatgtattagggatattttggtaagttcatctcac 55966363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 43514784 - 43514703
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||||||||||| ||||| | |||| ||||| | ||||||||| | ||||||| ||||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactc-cattgtacacttcatgtattagggttattttggtaagttcatctcac 43514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 23035981 - 23036063
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||  ||||||||| |||||||| ||| |||||| ||| |||||| ||||||||  ||||||||||||||    
T  23035981 gaaaatgttacatgaacctcctttattcctacaccct-attgtacaccctatatattagggatatttttgtaagttcatctcac 23036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 28982921 - 28982839
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||  |||||||| ||| |||| |  || |||||| ||||||||| ||||||||||||||    
T  28982921 gaaaatgttacatgaacaccctttatttctacaccct-attgtacatcccatatattagggatattttggtaagttcatctcac 28982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 33703142 - 33703224
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||  |||| | | ||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  33703142 gaaaatgttacatgaacaccctttatttctacatctt-attgtacaccccatgtattagggatattttggtaagttcatctcac 33703224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 39631102 - 39631184
Alignment:
Q  415 aaaatgttatatgaacacccttt-attcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||| || |||||| |||||| |||| |||||| ||||| ||||||| ||||||||| ||||||||| ||||||||||||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacc-tcattgtacacctcatgtattagggatattttggtaagttcatctcac 39631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 9260297 - 9260367
Alignment:
Q  298 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 368  Q
    |||| |||| |||| ||||||||||||| |||||||||| |||||||||| ||| || ||||||| |||||    
T  9260297 acatccatgagaagttctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatg 9260367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 27893940 - 27893859
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| || |||||| |||||||||||| || |||| ||||||  ||||||||| ||||||||| ||| ||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcc-cattgtacaccccatgtattagggatattttggtaatttcatctcac 27893859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 28988474 - 28988555
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctca 496  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||  ||| | ||| || |||||| ||| |||||||||    
T  28988474 gaaaatgttacatgaacaccctttattcataca-cctcattgtacaccccatgcactagggacattttgataaattcatctca 28988555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 43735744 - 43735825
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||| ||| ||||||| ||||||||| |||| | ||||||||||    ||||||||||||||||||| ||||||||||||||    
T  43735744 aaaatattacatgaacatcctttattcctacatc-tcattatacattccatgtattagagatattttgataagttcatctcac 43735825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 497
Target Start/End: Complemental strand, 48463554 - 48463467
Alignment:
Q  409 attaagaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||| |||||||||| || |||||| ||||||||||||   ||||| |||| |  ||||||||| ||||||||| ||||||||||||||    
T  48463554 attaggaaaatgttacataaacaccatttattcatacatt-tcattgtacatcccatgtattagggatattttggtaagttcatctcac 48463467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 17619251 - 17619169
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||| |||| ||||||||||| ||| ||||||  ||| ||||  ||||||||| ||| ||||||||||    
T  17619251 gaaaatgttacatgaacaccttttaatcatacaccct-attgtacaccccatgcattaaggatattttggtaaattcatctcac 17619169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 35017734 - 35017815
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| || |  |||||| ||||||  ||||| ||| ||||||||| ||||||||||||||    
T  35017734 gaaaatgttacatgaacaccctttattcctata-tctcattgtacaccccatgta-tagggatattttggtaagttcatctcac 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 43949900 - 43949818
Alignment:
Q  415 aaaatgttatatgaacacccttt-attcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||| || ||||||||||||| |||| | |||| ||||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacc-tcattgtacaccccatgtattagggatattttggtaagttcatctcac 43949818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 960969 - 960890
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatct 494  Q
    |||||||||| |||||||||||||| |||||||| || ||| |||||| |||  ||||| || |||||| ||| |||||||    
T  960969 gaaaatgttacatgaacaccctttaatcatacactct-attgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 450
Target Start/End: Complemental strand, 49229763 - 49229727
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccct 450  Q
    |||||||||||||||||| |||||| |||||||||||    
T  49229763 gaaaatgttatatgaacatcctttaatcatacaccct 49229727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 255 - 374
Target Start/End: Original strand, 18203126 - 18203244
Alignment:
Q  255 aatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggt 354  Q
    |||||||||  || |||||  |||||||||||| |||||||| |||||||||| || |||||||| |||||||||||||||| |||||||||||||||||    
T  18203126 aatgggatctaggagggtggtctcttgttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggt 18203224  T
Q  355 ggaggagactgatgtaggag 374  Q
    ||||||||||||||||||||    
T  18203225 ggaggagactgatgtaggag 18203244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 374
Target Start/End: Original strand, 22873499 - 22873620
Alignment:
Q  253 ccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagag 352  Q
    |||||||||||| || ||||   ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||| ||| | ||||    
T  22873499 ccaatgggatccaggagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagag 22873598  T
Q  353 gtggaggagactgatgtaggag 374  Q
    ||||| ||||||||||||||||    
T  22873599 gtggatgagactgatgtaggag 22873620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 276 - 412
Target Start/End: Complemental strand, 34374162 - 34374024
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga-- 373  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||| ||      
T  34374162 ctcttgttcattggaagagtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagagg 34374063  T
Q  374 gtttcctttgtaattttctatttcagcctaattttatta 412  Q
    |||||||| ||| |||  ||||||||   ||||||||||    
T  34374062 gtttccttagtattttattatttcagttcaattttatta 34374024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 22888965 - 22889063
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| ||||||||||||||||    
T  22888965 ctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggag 22889063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 390
Target Start/End: Original strand, 12881715 - 12881850
Alignment:
Q  256 atgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtg 355  Q
    ||||||||| || |||||  ||||||||||||| || |||| |||||||||||||| |||| |||  ||||||| |||||| |||||||||||  |||||    
T  12881715 atgggatccaggagggtggtctcttgttcattgaagaagtcaacatgcatgggaagttctt-atcggaatgagagctcggggtcgagttcttcttaggtg 12881813  T
Q  356 gaggagactgatgtagga--gtttcctttgtaatttt 390  Q
    ||||||||||||||||||  |||||||| ||||||||    
T  12881814 gaggagactgatgtaggagggtttccttagtaatttt 12881850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 22910508 - 22910606
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| ||||||||||||||||    
T  22910508 ctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggag 22910606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 3541947 - 3542007
Alignment:
Q  314 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3541947 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 3542007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 30049617 - 30049677
Alignment:
Q  314 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30049617 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 30049677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 30051904 - 30051964
Alignment:
Q  314 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30051904 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 30051964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 7292748 - 7292830
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| | ||||||| |||||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  7292748 gaaaatgttacaagaacaccatttattcatacacc-tcattatacaccctatgtattagggatattttggtaagttcatctcac 7292830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 26670108 - 26670026
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| ||||||||||||||    
T  26670108 gaaaatgttacatgaacaccctttattcctacacc-tcattgtacacctcatgtattagggatattttggtaagttcatctcac 26670026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 7273434 - 7273352
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||||| | ||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  7273434 gaaaatgttacatgaacaccctttattcctacacctt-attgtacaccccatgtattagagatattttggtaagttcatctcac 7273352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 9698432 - 9698350
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  9698432 gaaaatgttacatgaacaccctttattcctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 9698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 12778782 - 12778690
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgta 370  Q
    ||||||||||||||||||||| |||||||  |||| ||||  |||| |||||||| | ||| || ||||||||||||||||||||||||||||||    
T  12778782 ctcttgttcattggaggagtcaacatgcaaaggaaactct--atcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgta 12778690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 7367550 - 7367632
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||||||||||| | |||||||||||| ||||||| |||| |  ||||||||| ||||||||| ||||||||||||||    
T  7367550 gaaaatgttatatgaacatcatttattcataca-cctcattgtacatcccatgtattagggatattttggtaagttcatctcac 7367632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 30735984 - 30736065
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||  ||||||| ||||||| |||| ||||||| ||||||||| ||||||||| ||||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccc-cattgtacacctcatgtattagtgatattttggtaagttcatctcac 30736065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 13743320 - 13743238
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||| |||||||||||| ||  ||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  13743320 gaaaatgttacatgaacaccttttattcatacatcca-attgtacaccccatgtattagggatattttggtaagttcatctcac 13743238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 13748820 - 13748738
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||| |||||||||||| ||  ||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  13748820 gaaaatgttacatgaacaccttttattcatacatcca-attgtacaccccatgtattagggatattttggtaagttcatctcac 13748738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 30014344 - 30014426
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || ||||||||| |  |||||||||  |||||||| ||||||||||||||    
T  30014344 gaaaatgttacatgaacaccctttattcctacatcc-cattatacatcccatgtattaggcatattttggtaagttcatctcac 30014426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 24204085 - 24204004
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||| ||||||| |||||||| ||| |||||   ||||||||| ||||||||| ||||||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccct-attgtacactccatgtattagggatattttggtaagttcatctcac 24204004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 27441544 - 27441625
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| |||||||||||||| ||||||||||| ||| |||| | |||||||||  ||||||||| ||| ||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccct-attgtacatcctatgtattaaggatattttggtaaattcatctcac 27441625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 26466800 - 26466882
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| || |||||||||||||| ||||||| |||| |||||   ||||||||| | ||||||| ||||||||||||||    
T  26466800 gaaaatgttacataaacaccctttattcctacaccc-cattgtacactccatgtattagggttattttggtaagttcatctcac 26466882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 18720019 - 18720069
Alignment:
Q  315 tttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactg 365  Q
    ||||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  18720019 tttatcaaaattagaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 3213401 - 3213483
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| || |||||||||||||||||||  |||||| ||||||  ||||||||  ||||||||| ||| ||||| ||||    
T  3213401 gaaaatgttacataaacaccctttattcataca-tctcattgtacaccccatgtattaaggatattttggtaaattcatttcac 3213483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 368
Target Start/End: Complemental strand, 8047718 - 8047663
Alignment:
Q  313 tctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 368  Q
    ||||||| | ||| |||||||||| || ||||||||||||||||||||||| ||||    
T  8047718 tctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatg 8047663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 32361109 - 32361167
Alignment:
Q  316 ttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    |||||| |||||||||||| | ||||||| || |||||||||| ||||| |||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggag 32361167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 31109321 - 31109245
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttca 491  Q
    |||||||||| |||||||||||||| ||||||| || |||||||||||  ||| | ||| ||||||||| ||| ||||    
T  31109321 gaaaatgttacatgaacaccctttaatcatacatcc-cattatacaccccatgcactagggatattttgataaattca 31109245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 374
Target Start/End: Original strand, 11194398 - 11194426
Alignment:
Q  346 ttcagaggtggaggagactgatgtaggag 374  Q
    |||||||||||||||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggag 11194426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 254 - 374
Target Start/End: Original strand, 49002 - 49122
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagag 352  Q
    ||||||||||||||||||||| ||| ||||||| ||| ||||| |||||||||| ||| ||||| |||| ||| |||||||||| | |||||||||||||    
T  49002 caatgggatccgggtgggtgttctcgtgttcataggaagagtcaacatgcatgg-aagttcttttatcagaataagaactcggggttgagttcttcagag 49100  T
Q  353 gtggaggagactgatgtaggag 374  Q
    ||||||||||||||||||||||    
T  49101 gtggaggagactgatgtaggag 49122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 10361 - 10459
Alignment:
Q  276 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| ||||||||||||||||    
T  10361 ctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggag 10459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 374
Target Start/End: Original strand, 37404 - 37523
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagag 352  Q
    ||||||||||||| |||| || |||  |||||| ||| ||||| |||||||||| ||||||||| |||| ||| |||| | ||| |||||||||||||||    
T  37404 caatgggatccggttgggcgttctccggttcataggaagagtcaacatgcatgg-aagctcttttatcagaataagaatttggg-tcgagttcttcagag 37501  T
Q  353 gtggaggagactgatgtaggag 374  Q
    ||||||||||||||||||||||    
T  37502 gtggaggagactgatgtaggag 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 254 - 374
Target Start/End: Complemental strand, 365999 - 365880
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 353  Q
    ||||||||||| || |||||  ||| ||||||||||| ||||| |||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||||    
T  365999 caatgggatcccggagggtggtctcctgttcattggaagagtcaacatacatgg-aagctctttatcaaaacgagaactcgaggtcgagttcttcagagg 365901  T
Q  354 tggaggagactgatgtaggag 374  Q
    ||||||||| ||||| |||||    
T  365900 tggaggagattgatgcaggag 365880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 27748565 - 27748646
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacc-tcattatacaccttatgtattagggatattttggtaagttcatctcac 27748646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 4190364 - 4190282
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  4190364 gaaaatgttacatgaacaccctttaatcatacaccct-attgtacaccttatgtattagagatattttggtaaattcatctcac 4190282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 25413682 - 25413764
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||  ||||||||||||||    
T  25413682 gaaaatgttacatgaacaccctttattcctacaccc-cattgtacaccttatgtattagggatatttttgtaagttcatctcac 25413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 36150131 - 36150213
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||| || ||||||||| ||||||||||||||    
T  36150131 gaaaatgttacatgaataccctttattcatacaccc-cattatacaccctatgtatcagggatattttggtaagttcatctcac 36150213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 54246247 - 54246165
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| ||||||| |||| |||||| |||||||||||||||||||  ||||||||||||||    
T  54246247 gaaaatgttacatgaacaccctttattcctacaccc-cattgtacaccctatgtattagagatatttttgtaagttcatctcac 54246165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 254 - 374
Target Start/End: Complemental strand, 8536780 - 8536660
Alignment:
Q  254 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 353  Q
    ||||||||||| || |||||  ||||||||||||||| ||||| ||||  ||| ||| || ||||||| ||| |||||||||  |||||||||| |||||    
T  8536780 caatgggatccaggagggtgatctcttgttcattggaagagtcaacatatatgagaaactttttatcagaataagaactcggagtcgagttctttagagg 8536681  T
Q  354 tggaggagactgatgtaggag 374  Q
    |||| ||| ||||||||||||    
T  8536680 tggaagaggctgatgtaggag 8536660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 410 - 497
Target Start/End: Original strand, 40480746 - 40480832
Alignment:
Q  410 ttaagaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||||||| ||||||||||||||||||||  ||| |||| |||| | |||||||||| ||||||||| ||||||||||||||    
T  40480746 ttaagaaaatgttacatgaacaccctttattcatatgccc-cattgtacatcctatgtattagggatattttggtaagttcatctcac 40480832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 42100689 - 42100771
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||||| ||||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  42100689 gaaaatgttacatgaacaccctttattcctacacc-tcattgtacaccccatgtattagggatattttggtaagttcatctcac 42100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 47191124 - 47191043
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  47191124 gaaaatgttacatgaacaccctttattcctacacc-tcattgtacaccc-atgtattagagatattttgataagttcatctcac 47191043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 54237097 - 54237179
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| || |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 54237179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 497
Target Start/End: Complemental strand, 42394519 - 42394436
Alignment:
Q  413 agaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||||| ||||||||||||||||| ||||  | |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  42394519 agaaaatgttacatgaacaccctttattcctacattc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 42394436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 24688501 - 24688419
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||  ||||| | |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  24688501 gaaaatgttacatgaacaccctttatttctacactc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 24688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 45127027 - 45126945
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| || ||||||||||||||||||| || |||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  45127027 gaaaatgttacataaacaccctttattcatacatcc-cattgtacaccccatgtattagggatattttggtaagttcatctcac 45126945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 46941054 - 46941136
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||| | ||||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  46941054 gaaaatgttacatgaacaccctttattcctacatc-tcattgtacaccccatgtattagggatattttggtaagttcatctcac 46941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 53581956 - 53581875
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| |||||||| |||||||||||||| | |||| |||| | |||||||||| ||||||||| ||||||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactc-cattgtacatcctatgtattagggatattttgataagttcatctcac 53581875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 3064116 - 3064068
Alignment:
Q  326 gagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  3064116 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggag 3064068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 40808866 - 40808948
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| || |||||| ||||||| ||||||| |||| ||||||  ||||||||| ||||||||| ||||||||||||||    
T  40808866 gaaaatgttacatcaacaccatttattcctacaccc-cattgtacaccccatgtattagggatattttggtaagttcatctcac 40808948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 497
Target Start/End: Complemental strand, 29558330 - 29558251
Alignment:
Q  417 aatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||||||||||||||||||||||||  |||||| |||||| ||| ||||||  |||| ||| ||| ||||||||||    
T  29558330 aatgttatatgaacaccctttattcataca-tctcattgtacaccctatatattaggaatatattggtaaattcatctcac 29558251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 53273783 - 53273701
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||||||||||| | ||||||| || ||| ||||| |||| |  ||||||||| ||||||||| ||||||||||||||    
T  53273783 gaaaatgttatatgaacatcatttattcctatacc-tcattgtacatcccatgtattagggatattttggtaagttcatctcac 53273701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 1078229 - 1078309
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| ||||||||||||||||| | || ||||||| ||||||| ||||||||| ||||||||  || |||||||||||    
T  1078229 aaaatgttacatgaacaccctttattcctgca-cctcattgtacacctaatgtattag-gatatttttgtaggttcatctcac 1078309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 2473084 - 2473000
Alignment:
Q  278 cttgttcattggaggagtcgacatgcatgggaagctcttt--atcaaaatgagaactcgggatcgagttcttcagaggtggagga 360  Q
    |||||||||||||| |||| ||||||||| |||| | |||  |||| |||||||||||||| |||||||||| | | ||||||||    
T  2473084 cttgttcattggagaagtcaacatgcatgagaagttttttttatcagaatgagaactcggggtcgagttctttaaaagtggagga 2473000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 9434125 - 9434207
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| |||||||||||||| |||||||| || ||| ||||||  ||| ||||| || |||||| ||| ||||||||||    
T  9434125 gaaaatgttacatgaacaccctttaatcatacactct-attgtacaccccatgcattagggacattttggtaatttcatctcac 9434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  328 gaactcgggatcgagttcttcagaggtggaggagactgatgtagga 373  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 496
Target Start/End: Complemental strand, 11064811 - 11064740
Alignment:
Q  424 tatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctca 496  Q
    |||||||| | |||||||||||||| ||||| |||||| ||||  |||||||||||||| | | |||||||||    
T  11064811 tatgaacatcatttattcatacacc-tcattgtacaccctatgctttagagatattttgattaattcatctca 11064740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 46005 - 45945
Alignment:
Q  314 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46005 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 45945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 686 - 768
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| ||||||||||||||    
T  686 gaaaatgttacatgaacaccctttattcctacacc-tcattgtacacctcatgtattagggatattttggtaagttcatctcac 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 23520 - 23441
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatct 494  Q
    |||||||||||||||||||||||||||| ||||| | |||| |||| |  ||||||||||||||||||| |||||||||||    
T  23520 gaaaatgttatatgaacaccctttattcctacactc-cattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 497
Target Start/End: Original strand, 112655 - 112738
Alignment:
Q  413 agaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||||| ||||||||||||||||| ||||  | |||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  112655 agaaaatgttacatgaacaccctttattcctacattc-cattgtacaccctatgtattagggatattttggtaagttcatctcac 112738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Original strand, 11252 - 11334
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||| | |||||||| |||||||||||||||| |||| ||||||  || |||||| ||||||||| ||||||||||||||    
T  11252 gaaaatgtcacatgaacacactttattcatacaccc-cattgtacaccccatatattagggatattttggtaagttcatctcac 11334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 14287 - 14205
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||  ||||||| |||| |||| | |||||||||| ||||||||  ||||||||||||||    
T  14287 gaaaatgttacatgaacaccctttatttctacaccc-cattgtacatcctatgtattagggatatttttgtaagttcatctcac 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 24615 - 24533
Alignment:
Q  414 gaaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    |||||||||| ||||||||||||||||  ||||||| |||| |||| | |||||||||| ||||||||  ||||||||||||||    
T  24615 gaaaatgttacatgaacaccctttatttctacaccc-cattgtacatcctatgtattagggatatttttgtaagttcatctcac 24533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 45817 - 45736
Alignment:
Q  415 aaaatgttatatgaacaccctttattcatacaccctcattatacaccttatgtattagagatattttgttaagttcatctcac 497  Q
    ||||||||| |||||||||||||| ||||||||||| ||| |||| | |||||||||  ||||||||| ||| ||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccct-attgtacatcctatgtattaaggatattttggtaaattcatctcac 45736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 145444 - 145542
Alignment:
Q  276 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 374  Q
    ||||||||||||| ||||||| ||| || | ||  | |||||||||| ||| | |||||||| || |||||||| |||||||||||||||||||||||||    
T  145444 ctcttgttcattgaaggagtcaacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggag 145542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 361
Target Start/End: Complemental strand, 144282 - 144197
Alignment:
Q  276 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggag 361  Q
    ||||||||||| | ||||||||||| || ||||  | |||||||||| ||| |||||||||| || |||||||||||| ||||||||    
T  144282 ctcttgttcatcgaaggagtcgacaatgaatggacaactctttatcagaataagaactcggg-tcaagttcttcagagatggaggag 144197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University