View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18677_high_5 (Length: 419)
Name: NF18677_high_5
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18677_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 49806836 - 49807237
Alignment:
| Q |
1 |
attaaaaattgttttgaccaacacaattgcacaatcaaaaaatattttgaaatttcgagttgaaagattattatggttaatcgccacacaatcgagggac |
100 |
Q |
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|||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49806836 |
attagaaattgttttgaccaacacaac-gcataat-aaaaaatattttgaaatttcgagttgaaagattattatggttaatcaccacacaatcgagggac |
49806933 |
T |
|
| Q |
101 |
taaaatgactattgtttcatnnnnnnncaccccaatgcgcatcttagcacagagattagaaacctaagccgaacgttaaaagcgccatcgtgtatataaa |
200 |
Q |
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| T |
49806934 |
aaaaatgactattgcttcataaaaaa-caccccaatgcgcatcttagcacagagattagaaacctaagccgaacgttaatagcgccatcgtgtatataaa |
49807032 |
T |
|
| Q |
201 |
cacgcacacgaaaacaaaagaaacactttacgttttcccggcgagttttcaagccaccgaagtttttgtctttcttctgaatttttctgagaaatttctt |
300 |
Q |
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| T |
49807033 |
cacgcacacgaaaacaaaagaaacactttacgttttcccggcgagttttcaagccaccgaagtttttgtctttcttctgaattttgctgagaaatttctt |
49807132 |
T |
|
| Q |
301 |
caactccgagaaatctcaatagg-tttttctctaaactcgcagtttctctgtttttcgctgctgctgttgtttcgatcaatggtgttttctggtgaagaa |
399 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49807133 |
caactccgagaaatctcaataggttttttctctaaactcgcagttactctgtttttcgctgttgctgttgtttcgatcaatggtgttttctggtgaagaa |
49807232 |
T |
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| Q |
400 |
gaaga |
404 |
Q |
| |
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||||| |
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| T |
49807233 |
gaaga |
49807237 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 22235486 - 22235531
Alignment:
| Q |
12 |
ttttgaccaacacaattgcacaatcaaaaaatattttgaaatttcga |
58 |
Q |
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||||||| |||| ||||||||||||||||| |||||||||||||||| |
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| T |
22235486 |
ttttgactaaca-aattgcacaatcaaaaattattttgaaatttcga |
22235531 |
T |
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