View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18677_high_6 (Length: 398)
Name: NF18677_high_6
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18677_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 16096533 - 16096159
Alignment:
| Q |
5 |
aaaaagactgaatgaaaacaaaatcgaaaaagagttaacaaagagaagaacttatctagtgcttaaaagcttcacatgttataactaattcacaccattt |
104 |
Q |
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| T |
16096533 |
aaaaagactgaatgaaaacaaaatcgaaaaagagttaacaaagagaagaacttatctagtgcttaaatgcttcacatgttataactaattcacaccattt |
16096434 |
T |
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| Q |
105 |
gtttgtgtctgattgataagggaaaagggaagttacctaaaagtgaaacccttgagttgaattgatcgatagaggaacatagttggcgttgtttatgcag |
204 |
Q |
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| T |
16096433 |
gtttgtgtctgattgataagggaaaagggaagttacctaaaagtgaaacccttgagttgaattgatcgatagaggaacatagttggcgttgtttatgcag |
16096334 |
T |
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| Q |
205 |
agaaagtaacatgaggatggtggagagaatggcaaagaagataaagaggtttgagttgttaccaatgggtttaaaaccggaccggaccaacagctgcgac |
304 |
Q |
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| T |
16096333 |
agaaagtaacatgaggatggtgaagagaatggcaaagaagataaagaggtttgagttgttaccaatgggtttaaaaccggaacggaccaacagctgcgac |
16096234 |
T |
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| Q |
305 |
cttctgagccggaaaccggacctgtgtccggtcgaaatggtcctcacaaccgacatgcagtagaaccggaaaact |
379 |
Q |
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| T |
16096233 |
cttctgagccggaaaccggacctgtgtccggtcgaaatggtcctcacaaccgacatgcaatagaaccggaaaact |
16096159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 16076538 - 16076469
Alignment:
| Q |
129 |
aagggaagttacctaaaagtgaaacccttgagttgaattgatcgatagaggaacatagttggcgttgttt |
198 |
Q |
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| T |
16076538 |
aaggaaagttacctaaaagtgagatcctagtgttgagttggtcgagagaggaagatagttggccttgttt |
16076469 |
T |
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