View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18677_high_8 (Length: 237)
Name: NF18677_high_8
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18677_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29586551 - 29586772
Alignment:
| Q |
1 |
atggaatgggcactctcacttctcctcaaccatccagaagcaatgaataaggtaagggctgaaatagacacttgtgtgggacaagataaacttgtgaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29586551 |
atggaatgggcactctcacttctcctcaaccatccagaaacaatgaataaggtaagggctgaaatagacacttgtgtgggacaagataaacttgtgaatg |
29586650 |
T |
|
| Q |
101 |
aatcagatgcttcaaaactaaaatacttgcaaatggtacttatggagacacttcgtttataccctccagctccactattgttaccacatgaatcctccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
29586651 |
aatcagatgcttcaaaactaaaatacttgcaaatggtacttatggagacacttcgtttataccctccagctccactaatgttaccacacgaatcctccaa |
29586750 |
T |
|
| Q |
201 |
tgattgcaatgtttgtggtttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29586751 |
tgattgcaatgtttgtggtttt |
29586772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University