View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18677_low_1 (Length: 602)
Name: NF18677_low_1
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18677_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 10303530 - 10302954
Alignment:
| Q |
1 |
atactataccttcccaagtaaattggacttccaaggaatatctgagacaatatggcagcaaatccaggttgaagtggaatgtaaagggcaaccagagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10303530 |
atactataccttcccaagtaaattggacttccaaggaatatctgagacaatatggcagcaaatccaggttgaagtggaatgtaaagggcaaccagagttg |
10303431 |
T |
|
| Q |
101 |
gccctaatatcttgttgctccaactcatgactgcataattaatggcagatgtaatagttccctgaacaaataagaacaatatgtcacaatccacacgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10303430 |
gccctaatatcttgttgctccaacacatgactgcataattaatggcagatgtaatagttccctgaacaaataagaacaatatgtcacaatccacacgtta |
10303331 |
T |
|
| Q |
201 |
aaaatcactaaattatctattagaagatacttctaataagtatctgttggaacataggataataatatcaagattttcatcctttaggaa--aaaactga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10303330 |
aaaatcactaaattatctattagaagatacttctaataagtatctgttggaacataggataataatatcaagattttcatcctttaggaaaaaaaactga |
10303231 |
T |
|
| Q |
299 |
agttgttttactctagtagttttcatttctctgttcatttccttgggacgtatttacctaaatacaattttcagcaacactcttaatatgcattcttgct |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10303230 |
agttgttttactctagtagttttcatttctctgttcacttccttgggacgtatttacctaaatacaattttcagcaacactcttaatatgcattcttgct |
10303131 |
T |
|
| Q |
399 |
taattaatagaaataaactagaacatgccttattgcctgtgaatgtttcaaagaaatttgcttagtgattttgaggattttgttctctaaaattagccaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10303130 |
taattaatagaaataaactagaacatgccttattgcctgtgaatgtttcaaagaaatttgcttagtgattttgaggattttgttctctaaaattagccaa |
10303031 |
T |
|
| Q |
499 |
gcaagacagtaaaatggacaaaatgatctacaacagaaatggctgataatggttcattatattgatttaaaatcata |
575 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10303030 |
gcaagacagtgaaatggacaaaatgatctacaacagaaatggctgataatggttcattatattgatttaaaatcata |
10302954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 10296183 - 10295748
Alignment:
| Q |
1 |
atactataccttcccaagtaaattggacttccaaggaatatctgagacaatatggcagcaaatccaggttgaagtggaatgtaaagggcaaccagagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10296183 |
atactataccttcccaagtaaattggacttccaaggaatatctgagacaatatggcagcaaatccaggttgaagtggaatgtaaagggcaaccagagttg |
10296084 |
T |
|
| Q |
101 |
gccctaatatcttgttgctccaactcatgactgcataattaatggcagatgtaatagttccctgaacaaataagaacaatatgtcacaatccacacgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | |
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|
| T |
10296083 |
gccctaatatcttgttgctccaactcatgactgcataattaaaggcagatgtaatacttccctgaacaaataaggacaatatgtcacaaaccacatg--- |
10295987 |
T |
|
| Q |
201 |
aaaatcactaaattatctattagaagatacttctaataagtatctgttggaacataggataataatatcaagattttcatcctttaggaaaaaactgaag |
300 |
Q |
| |
|
|||||||| ||||||| | |||||||||| |||||||||||||||||| ||||||||||||||| || ||| |||||||||| |
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|
| T |
10295986 |
------------ttatctatcagaagat-------aaaagtatctgtcggaacataggataataatttcaagattttcatcc-ttcggacaaaactgaag |
10295907 |
T |
|
| Q |
301 |
ttgttttactctagtagttttcatttctctgttcatttccttgggacgtatttacctaaatacaattttcagcaacactcttaatatgcattcttgctta |
400 |
Q |
| |
|
|| |||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| || ||||||||| ||||||||||||||||| |
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|
| T |
10295906 |
tttttttacgc---tagttttcatttctctgttcatttccttgggatgta-ttacctaaatacaattttaagtaacactcttgatatgcattcttgctta |
10295811 |
T |
|
| Q |
401 |
attaatagaaataaactagaacatgccttattgcctgtgaatgtttcaaagaaatttgcttag |
463 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
10295810 |
attaatagaaataaacaagaacatgccttattgcctatgaatgtttcacataaatttgcttag |
10295748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 10287833 - 10287630
Alignment:
| Q |
1 |
atactataccttcccaagtaaattggacttccaaggaatatctgagacaatatggcagcaaatccaggttgaagtggaatgtaaagggcaaccagagttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| |
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|
| T |
10287833 |
atactataccttcccaagtaaattggacttccaaggaatatctgagacaatatggcagcaaatgcgggttgaagtggaacgtaaagggcaaccagagttg |
10287734 |
T |
|
| Q |
101 |
gccctaatatcttgttgctccaactcatgactgcataattaatggcagatgtaatagttccctgaacaaataagaacaatatgtcacaatccacacgtta |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||| |||||||||||| |||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
10287733 |
gccctaatatcttgttgctccaactgatgactccataactaaatgcagatgtaataattccctgagcaaataaggacaatatgtcacaatccacatgtta |
10287634 |
T |
|
| Q |
201 |
aaaa |
204 |
Q |
| |
|
|||| |
|
|
| T |
10287633 |
aaaa |
10287630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 10278759 - 10278958
Alignment:
| Q |
7 |
taccttcccaagtaaattggacttccaaggaatatctgagacaatatggcagcaaatccaggttgaagtggaatgtaaagggcaaccagagttggcccta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| | ||||| ||||||||||||||||||| ||||||||| ||| | || |||||| | |
|
|
| T |
10278759 |
taccttcccaagtaaattggacttccaagaaaaatctgagacaagagggcagaaaatccaggttgaagtggattgtaaagggaaactaaagctggcccca |
10278858 |
T |
|
| Q |
107 |
atatcttgttgctccaactcatgactgcataattaatggcagatgtaatagttccctgaacaaataagaacaatatgtcacaatccacacgttaaaaatc |
206 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||| |||||| | ||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
10278859 |
atatcttgttgcaccaactaatgactgcatagttaaaggcagaagcaatagttccctaaacaaataagaaaaatatgtcacaatccacatgttaaaaatc |
10278958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 354 - 508
Target Start/End: Complemental strand, 10287542 - 10287386
Alignment:
| Q |
354 |
acctaaatacaattttcagcaacactcttaatatgcattcttgcttaattaatagaaataaactagaacatgccttattgcctgtgaatgtttcaaagaa |
453 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| | || |
|
|
| T |
10287542 |
acctaaatacaattttcagtaacactcttaatatgcatgcttgcttgattgatagaaataaactagaacttgccttattgcctgtgaatgtttcacataa |
10287443 |
T |
|
| Q |
454 |
atttgcttagtgattttgaggattttgtt----ctctaaaattagccaagcaagacagt |
508 |
Q |
| |
|
| || || || |||||||||||||| || | |||||||||||| ||||||||||| |
|
|
| T |
10287442 |
actt--tttgtcattttgaggatttttttttcccgctaaaattagcctagcaagacagt |
10287386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 10263954 - 10264122
Alignment:
| Q |
1 |
atactataccttcccaagtaaattggacttccaaggaatatctgagacaatatggcagcaaatccaggttgaagtggaatgtaaagggcaaccagagttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||| |||||| || ||||| ||| |||||||||||||| |||| |||||||||| || || |
|
|
| T |
10263954 |
atactataccttcccaagtaaattggactaccaaggaacatccgagacagtagggcagaaaaagcaggttgaagtggattgtatagggcaaccaaagctg |
10264053 |
T |
|
| Q |
101 |
gccctaatatcttgttgctccaactcatgactgcataattaatggcagatgtaatagttccctgaacaa |
169 |
Q |
| |
|
|||||||||||||||| | ||| | |||| | |||| |||| |||||||| |||| |||||||||||| |
|
|
| T |
10264054 |
gccctaatatcttgttacaccatgtaatgagtccatagttaagggcagatgcaataattccctgaacaa |
10264122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 10295291 - 10295225
Alignment:
| Q |
510 |
aaatggacaaaatgatctacaacagaaatggctgataatggttcattatattgatttaaaatcatat |
576 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
10295291 |
aaatggacaaagtgatctacaacagaaatggctaataagggttcattacattgatttaaaatcatat |
10295225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 508
Target Start/End: Complemental strand, 10295349 - 10295315
Alignment:
| Q |
474 |
gattttgttctctaaaattagccaagcaagacagt |
508 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
10295349 |
gattttgttctctaaaattaaccaagcaagacagt |
10295315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 30584382 - 30584270
Alignment:
| Q |
64 |
ccaggttgaagtggaatgtaaagggcaaccagagttggccctaatatcttgttgctccaactcatgactgcataattaatggcagatgtaatagttccct |
163 |
Q |
| |
|
||||||||||||||| | ||||||||||||| | ||| || || |||||||||||||| | |||| | |||| |||| |||||||| |||| |||||| |
|
|
| T |
30584382 |
ccaggttgaagtggattataaagggcaaccatggctgggcccaagatcttgttgctccatgtgatgattccatagttaagggcagatgcaataattccct |
30584283 |
T |
|
| Q |
164 |
gaacaaataagaa |
176 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
30584282 |
gaataaagaagaa |
30584270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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