View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18677_low_12 (Length: 236)
Name: NF18677_low_12
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18677_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 6132907 - 6132683
Alignment:
| Q |
5 |
gtgcaagacatctacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaaaagcttcctcaattagaggaact |
104 |
Q |
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| T |
6132907 |
gtgcaagacatttacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaatagcttcctcaattagaggaact |
6132808 |
T |
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| Q |
105 |
tgatatatcactcagcaacctaactcatcattcttttgaagccattggccgatgttgccctcgattgaaaacctttaaattcaacattcaagcatacaaa |
204 |
Q |
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| T |
6132807 |
tgatatatcactcagcaacctaactcatcattcttttgaagccattggccgaagttgccctcgattgaaaacctttaaatttaacattcaagcatacaaa |
6132708 |
T |
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| Q |
205 |
tatccacgcgttgaagatgatgatg |
229 |
Q |
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| T |
6132707 |
tatccacgcgttgaagatgatgatg |
6132683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 6043250 - 6043431
Alignment:
| Q |
21 |
acgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaaaagcttcctcaattagaggaacttgatatatcactcagc |
120 |
Q |
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| T |
6043250 |
acgccttcgtcttttatgttgctatggcgtaacagatgaaggattgtgtgaagttgctgaaaagcttcctcagctggaggaacttgatataacaatcagc |
6043349 |
T |
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| Q |
121 |
aacctaactcatcattcttttgaagccattggccgatgttgccctcgattgaaaacctttaaattcaacattcaagcataca |
202 |
Q |
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| T |
6043350 |
agcttgtccaatgaacctttggaagccattggccgaggttgccctcaattgaaaacctttaaattcaacattgaaggataca |
6043431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 6053312 - 6053534
Alignment:
| Q |
7 |
gcaagacatctacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaaaagcttcctcaattagaggaacttg |
106 |
Q |
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||||| ||||||||||||||||||||||| | ||||| | | || | ||| ||| ||| ||||| |||| ||||||| ||||| ||||||||||||| |
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| T |
6053312 |
gcaagtcatctacaacgccttcgtcttgcatcttgctggagcatatcagatgaaggattgtgtgatgctgctgaaaagtttccttgcttagaggaacttg |
6053411 |
T |
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| Q |
107 |
atatatcactcagcaacctaactcatcattcttttgaagccattggccgatgttgccctcgattgaaaacctttaaattcaacattcaagcatacaaata |
206 |
Q |
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| T |
6053412 |
atatatcaatcagcaacttatccgatcgtcttttcgaaccaattggccgacgttgccctcgattgaaaacattgaaattcaacagtcaagggtacagaca |
6053511 |
T |
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| Q |
207 |
tccacgcgttgaagatgatgatg |
229 |
Q |
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| T |
6053512 |
tccacacattcaatatgatgatg |
6053534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 6037788 - 6037895
Alignment:
| Q |
5 |
gtgcaagacatctacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaaaagcttcctcaattagaggaact |
104 |
Q |
| |
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||||||| ||||||| |||||||| |||||| |||||||||| ||||| ||| ||| ||| ||||||| || |||||| || |||| ||||||||||| |
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| T |
6037788 |
gtgcaagtcatctacgacgccttcatcttgcatgttgctatagggtaacagatgaagtattgtgtgaagttgctgaaaaattttctcacttagaggaact |
6037887 |
T |
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| Q |
105 |
tgatatat |
112 |
Q |
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|||||||| |
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| T |
6037888 |
tgatatat |
6037895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 6037931 - 6037970
Alignment:
| Q |
148 |
attggccgatgttgccctcgattgaaaacctttaaattca |
187 |
Q |
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| T |
6037931 |
attggccgatgttgccctcgattgaaaacccttgaattca |
6037970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 6046672 - 6046722
Alignment:
| Q |
142 |
gaagccattggccgatgttgccctcgattgaaaacctttaaattcaacatt |
192 |
Q |
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||||| |||||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
6046672 |
gaagctattggccgatgttgtcctcagttgaaaaccttcaaattcaacatt |
6046722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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