View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18677_low_2 (Length: 541)

Name: NF18677_low_2
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18677_low_2
NF18677_low_2
[»] chr7 (4 HSPs)
chr7 (18-511)||(35446630-35447123)
chr7 (457-493)||(31283516-31283552)
chr7 (457-493)||(36609875-36609911)
chr7 (457-493)||(47297394-47297430)
[»] scaffold0445 (1 HSPs)
scaffold0445 (457-493)||(4828-4864)
[»] scaffold0196 (1 HSPs)
scaffold0196 (457-493)||(8740-8776)
[»] chr8 (6 HSPs)
chr8 (457-493)||(28969653-28969689)
chr8 (457-492)||(24688625-24688660)
chr8 (457-492)||(29684232-29684267)
chr8 (457-493)||(15872102-15872138)
chr8 (457-493)||(25722796-25722832)
chr8 (457-493)||(28205431-28205467)
[»] chr4 (5 HSPs)
chr4 (457-493)||(2133536-2133572)
chr4 (457-493)||(32547384-32547420)
chr4 (457-493)||(23431680-23431716)
chr4 (457-493)||(26054494-26054530)
chr4 (457-493)||(35595638-35595674)
[»] chr2 (8 HSPs)
chr2 (457-493)||(1071188-1071224)
chr2 (458-494)||(1111086-1111122)
chr2 (457-493)||(37609978-37610014)
chr2 (457-493)||(12069441-12069477)
chr2 (457-493)||(13836999-13837035)
chr2 (457-493)||(19813927-19813963)
chr2 (457-493)||(33676765-33676801)
chr2 (457-489)||(42185777-42185809)
[»] chr1 (13 HSPs)
chr1 (457-493)||(34969380-34969416)
chr1 (457-490)||(1531301-1531334)
chr1 (457-493)||(7548431-7548467)
chr1 (457-493)||(8574013-8574049)
chr1 (457-493)||(11344936-11344972)
chr1 (457-489)||(12301013-12301045)
chr1 (457-493)||(13057276-13057312)
chr1 (457-493)||(13303940-13303976)
chr1 (457-493)||(29689399-29689435)
chr1 (457-493)||(29716911-29716947)
chr1 (457-493)||(31528632-31528668)
chr1 (457-493)||(32306929-32306965)
chr1 (457-493)||(52043375-52043411)
[»] chr5 (9 HSPs)
chr5 (458-493)||(28766298-28766333)
chr5 (457-491)||(42027686-42027720)
chr5 (457-493)||(832180-832216)
chr5 (457-493)||(8786744-8786780)
chr5 (457-493)||(17210564-17210600)
chr5 (457-493)||(19650708-19650744)
chr5 (457-489)||(20176521-20176553)
chr5 (457-489)||(24836763-24836795)
chr5 (465-493)||(36907427-36907455)
[»] chr3 (8 HSPs)
chr3 (456-493)||(50098625-50098662)
chr3 (457-493)||(5492523-5492559)
chr3 (457-493)||(12565531-12565567)
chr3 (457-493)||(13155486-13155522)
chr3 (457-493)||(13259930-13259966)
chr3 (457-493)||(14418977-14419013)
chr3 (457-493)||(32509247-32509283)
chr3 (457-493)||(51006168-51006204)
[»] scaffold0021 (1 HSPs)
scaffold0021 (457-489)||(4022-4054)
[»] scaffold0002 (1 HSPs)
scaffold0002 (457-493)||(151466-151502)


Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 35447123 - 35446630
Alignment:
Q  18 aaaagatgatttgggaaaccgaggttcttagaacttcgttcccacaaaaggtgctattaaatgttcttgccggagaaaagaagtatcagccataggaggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35447123 aaaagatgatttgggaaaccgaggttcttagaacttcgttcccacaaaaggcgctattaaatgttcttgccggagaaaagaagtatcagccataggaggt 35447024  T
Q  118 gcaaagcaactttaactctagttgatggatgtccttccccaatgtcaagggtgtacacgcaaagacactcaaacactcgagtcaccaagatttcaaggtg 217  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  35447023 gcaaagcaactttaactccagttgacggatgtccttccccaatgtcaagggtgtacttgcaaagacactcaaacactcgagtcaccaaggtttcaaggtg 35446924  T
Q  218 atttcttggaataagggtgtgtacctgatttcattgtggtctgctctacttatagaccctcgaagtggataagtcgattatacccttatgactcgataat 317  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35446923 atttcttggaataagggtgtgtgcctgatttcattgtggtctgctctacttatagaccctcgaagtggataagtcgattatacccttatgactcgataat 35446824  T
Q  318 cgggtgatgtttgatcatatggtgtgatctgagcacgttctctagtgcacgggggctcttcatcaatgcatgttgtatgcagctgcagatgatcatctta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35446823 cgggtgatgtttgatcatatggtgtgatctgagcacgttctctagtgcacgggggctcttcatcaatgcatgttgtatgcagctgcagatgatcatctta 35446724  T
Q  418 ctaggccaaaactggaataatggattacgggttgttaggattatacttttaaacaattttttctataataaagattatcattggtaaaaattta 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  35446723 ctaggccaaaactggaataatggattacgggttgttaggattatacttttaaacaattttttctataataaagattgtcgttggtaaaaattta 35446630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 31283552 - 31283516
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| ||||||||||||||||||||||||||||    
T  31283552 attatactattaaacaattttttctataataaagatt 31283516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 36609911 - 36609875
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36609911 attatacccttaaacaattttttctataataaagatt 36609875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 47297394 - 47297430
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| |||||||||||||| |||||||||||||    
T  47297394 attatactcttaaacaattttttttataataaagatt 47297430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 4828 - 4864
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| |||||||||||||||||||||||||||||    
T  4828 attatacatttaaacaattttttctataataaagatt 4864  T

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Target: scaffold0196 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 8776 - 8740
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| |||||||||||||||||||||||||||||    
T  8776 attatacctttaaacaattttttctataataaagatt 8740  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 28969689 - 28969653
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||||||||||||| |||||||||||||||||||    
T  28969689 attatacttttaaacaactttttctataataaagatt 28969653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 492
Target Start/End: Original strand, 24688625 - 24688660
Alignment:
Q  457 attatacttttaaacaattttttctataataaagat 492  Q
    ||||||| ||||||||||||||||||||||||||||    
T  24688625 attatacctttaaacaattttttctataataaagat 24688660  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 492
Target Start/End: Original strand, 29684232 - 29684267
Alignment:
Q  457 attatacttttaaacaattttttctataataaagat 492  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29684232 attatacttttaaacaactttttctataataaagat 29684267  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 15872138 - 15872102
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  15872138 attatacctttaaacaactttttctataataaagatt 15872102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 25722796 - 25722832
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  25722796 attatacctttaaacaactttttctataataaagatt 25722832  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 28205431 - 28205467
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  28205431 attatactttaaaacaatattttctataataaagatt 28205467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 2133536 - 2133572
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2133536 attatactcttaaacaattttttctataataaagatt 2133572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 32547420 - 32547384
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32547420 attatactcttaaacaattttttctataataaagatt 32547384  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 23431716 - 23431680
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23431716 attatacccttaaacaattttttctataataaagatt 23431680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 26054530 - 26054494
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||||||||| || |||||||||||||||||||    
T  26054530 attatacttttaaataactttttctataataaagatt 26054494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 35595674 - 35595638
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  35595674 attatactcttaaacagttttttctataataaagatt 35595638  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 1071224 - 1071188
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| ||||||||||||||||||||||||||||    
T  1071224 attatactcttaaacaattttttctataataaagatt 1071188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 494
Target Start/End: Original strand, 1111086 - 1111122
Alignment:
Q  458 ttatacttttaaacaattttttctataataaagatta 494  Q
    ||||||| |||||||||||||||||||||||||||||    
T  1111086 ttatactcttaaacaattttttctataataaagatta 1111122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 37609978 - 37610014
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||||||||||||| |||||||||||||||||||    
T  37609978 attatacttttaaacaactttttctataataaagatt 37610014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 12069441 - 12069477
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| |||||||| |||||||||||||||||||    
T  12069441 attatactcttaaacaactttttctataataaagatt 12069477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 13837035 - 13836999
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| || |||||||||||||||||||||||||    
T  13837035 attatactcttgaacaattttttctataataaagatt 13836999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 19813963 - 19813927
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  19813963 attatacacttaaacaattttttctataataaagatt 19813927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 33676801 - 33676765
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  33676801 attatacccttaaacaattttttctataataaagatt 33676765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 489
Target Start/End: Original strand, 42185777 - 42185809
Alignment:
Q  457 attatacttttaaacaattttttctataataaa 489  Q
    ||||||| |||||||||||||||||||||||||    
T  42185777 attatacatttaaacaattttttctataataaa 42185809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 34969416 - 34969380
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34969416 attatactcttaaacaattttttctataataaagatt 34969380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 490
Target Start/End: Complemental strand, 1531334 - 1531301
Alignment:
Q  457 attatacttttaaacaattttttctataataaag 490  Q
    ||||||| ||||||||||||||||||||||||||    
T  1531334 attatacctttaaacaattttttctataataaag 1531301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 7548431 - 7548467
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  7548431 attatacccttaaacaattttttctataataaagatt 7548467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 8574013 - 8574049
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| |||||||| |||||||||||||||||||    
T  8574013 attatactcttaaacaactttttctataataaagatt 8574049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 11344936 - 11344972
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| |||||||| |||||||||||||||||||    
T  11344936 attatactcttaaacaactttttctataataaagatt 11344972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 489
Target Start/End: Original strand, 12301013 - 12301045
Alignment:
Q  457 attatacttttaaacaattttttctataataaa 489  Q
    ||||||||||||||||| |||||||||||||||    
T  12301013 attatacttttaaacaactttttctataataaa 12301045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 13057312 - 13057276
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  13057312 attatacctttaaataattttttctataataaagatt 13057276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 13303940 - 13303976
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  13303940 attatacctttaaacaactttttctataataaagatt 13303976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 29689399 - 29689435
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  29689399 attatacccttaaacaattttttctataataaagatt 29689435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 29716911 - 29716947
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  29716911 attatacccttaaacaattttttctataataaagatt 29716947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 31528632 - 31528668
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  31528632 attatacatttaaacaactttttctataataaagatt 31528668  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 32306929 - 32306965
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32306929 attatacccttaaacaattttttctataataaagatt 32306965  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 52043375 - 52043411
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  52043375 attatacctttaaacaactttttctataataaagatt 52043411  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 493
Target Start/End: Original strand, 28766298 - 28766333
Alignment:
Q  458 ttatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28766298 ttatactcttaaacaattttttctataataaagatt 28766333  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 491
Target Start/End: Complemental strand, 42027720 - 42027686
Alignment:
Q  457 attatacttttaaacaattttttctataataaaga 491  Q
    |||||||| ||||||||||||||||||||||||||    
T  42027720 attatactcttaaacaattttttctataataaaga 42027686  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 832180 - 832216
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  832180 attatacctttaaacaactttttctataataaagatt 832216  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 8786780 - 8786744
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  8786780 attatacctttaaacaactttttctataataaagatt 8786744  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 17210564 - 17210600
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  17210564 attatacccttaaacaattttttctataataaagatt 17210600  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 19650708 - 19650744
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  19650708 attatacctttaaacaactttttctataataaagatt 19650744  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 489
Target Start/End: Complemental strand, 20176553 - 20176521
Alignment:
Q  457 attatacttttaaacaattttttctataataaa 489  Q
    |||||||||||||| ||||||||||||||||||    
T  20176553 attatacttttaaataattttttctataataaa 20176521  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 489
Target Start/End: Original strand, 24836763 - 24836795
Alignment:
Q  457 attatacttttaaacaattttttctataataaa 489  Q
    |||||||| ||||||||||||||||||||||||    
T  24836763 attatactcttaaacaattttttctataataaa 24836795  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 493
Target Start/End: Original strand, 36907427 - 36907455
Alignment:
Q  465 tttaaacaattttttctataataaagatt 493  Q
    |||||||||||||||||||||||||||||    
T  36907427 tttaaacaattttttctataataaagatt 36907455  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 50098662 - 50098625
Alignment:
Q  456 gattatacttttaaacaattttttctataataaagatt 493  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  50098662 gattatactttaaaacaattttttctataataatgatt 50098625  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 5492559 - 5492523
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  5492559 attatacctttaaacaactttttctataataaagatt 5492523  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 12565567 - 12565531
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  12565567 attatacctttaaacaactttttctataataaagatt 12565531  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 13155522 - 13155486
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  13155522 attatacctttaaacaactttttctataataaagatt 13155486  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 13259966 - 13259930
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  13259966 attatacctttaaacaactttttctataataaagatt 13259930  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 14418977 - 14419013
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||  ||||||||||||||||||||||||||||    
T  14418977 attatacccttaaacaattttttctataataaagatt 14419013  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 32509247 - 32509283
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  32509247 attatacatttaaacaaatttttctataataaagatt 32509283  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 51006168 - 51006204
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  51006168 attatactcttaaataattttttctataataaagatt 51006204  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 489
Target Start/End: Complemental strand, 4054 - 4022
Alignment:
Q  457 attatacttttaaacaattttttctataataaa 489  Q
    ||||||||||||||||| |||||||||||||||    
T  4054 attatacttttaaacaactttttctataataaa 4022  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 151466 - 151502
Alignment:
Q  457 attatacttttaaacaattttttctataataaagatt 493  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  151466 attatacctttaaacaactttttctataataaagatt 151502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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