View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18677_low_4 (Length: 485)
Name: NF18677_low_4
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18677_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 29883008 - 29882546
Alignment:
| Q |
11 |
caaaggcaagtggcaactttgatgatgatgcttctatgatattcctctgcacatgttcaggaaaacataggtatcggatataattcgagatgctcaattc |
110 |
Q |
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| T |
29883008 |
caaaggcaagtggcaactttgatgatgatgcttctatgatattcctctgcacatgttcaggaaaacataggtatcggatataattcgagatgctcaattc |
29882909 |
T |
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| Q |
111 |
tataacatggataaattctgtgaccatattgttcaaaagctatgtatgacttttctgactcagacgaatgtttcaacatttttctcaaattaaagaataa |
210 |
Q |
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| T |
29882908 |
tataacatggataaattctgtgaccatattgttcaaaagctatgtatgacttttctgactcagacgaatgtttcaacatttttctcaaattaaagaataa |
29882809 |
T |
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| Q |
211 |
aaatatttgatgatgatccttctttgcaaatttgaactttacatttggatatggataatccttcattttcccacgtatcatgaagaagaagcttctctca |
310 |
Q |
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| T |
29882808 |
aaatatttgatgatgatccctctttgcaaatttgaactttacatttggatatggataatccttcatttttccacgtatcatgaagaagaagcttctctca |
29882709 |
T |
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| Q |
311 |
attaaatgtgatgtaatgacctcaataaaa----taatatcatgtgtagagcagtatagaccgtagattgcggtgtgatcaagaggtgcaaaatggattt |
406 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29882708 |
attaaatgtgatgtaatgacctcaataaaataagtaatatcatgtgtagagcagtatagaccgtagattgcggtgtgatcaagaggtgcaaaatggattt |
29882609 |
T |
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| Q |
407 |
agtatgtacaaaaattgaaaataaatttttaattgtatttttaatcctctatttgattacact |
469 |
Q |
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| T |
29882608 |
agtatgtacaaaaattgaaaataaatttttaattgtatttttaatcctctatttgattacact |
29882546 |
T |
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