View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18677_low_5 (Length: 458)
Name: NF18677_low_5
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18677_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 6132988 - 6133162
Alignment:
| Q |
1 |
agtgttactaaagtatgtgtggtaagtttagttatctatctaaaaatgtcaaatttcgtatttataaatcacacattgacattttataatataaacagaa |
100 |
Q |
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| T |
6132988 |
agtgttactaaagtatgtgtggtaagtttagttatctatctaaaaatttcaaatttcgtatttataaatcacatattgacattttataatataaacagaa |
6133087 |
T |
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| Q |
101 |
gcactacaaactagtctgtattacaaacacgtgcaagttttcacttttggcgataaatatatcacaaacataaaa |
175 |
Q |
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| T |
6133088 |
gcactacaaactagtatgtattacaaacacgtgcaagttttcacttttggcgataactatatcacaaacataaaa |
6133162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 267 - 458
Target Start/End: Original strand, 6133391 - 6133587
Alignment:
| Q |
267 |
ctaaaatatcactcaccctttaattaaggatgtgtttggtatgctataaaataa-----ggaattggatataacaactaatgtgaattaaaaataaataa |
361 |
Q |
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| T |
6133391 |
ctaaaatatcactaaccctttaattaaggatgtttttggtatgctataaaataaaaaaaggaattggacataacaacgaatgtgaattaaaaataaataa |
6133490 |
T |
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| Q |
362 |
gaaagagaaaatgaaacatactacgaattagcgatatggtggagaagagcatcggtagcaaaattgtcgatgttgatatgaattatgtggccgaagc |
458 |
Q |
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| T |
6133491 |
gaaagagaaaatgaaacatactacgaattagtgatatggtggagaagagcatcggtagcaaaattctcgatgttgatatgaattatgtggccgaagc |
6133587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 6133267 - 6133352
Alignment:
| Q |
174 |
aaggggaacacattttttgtcctttcttttcaacacaaacacacaattgatggcgttcagtctcacaattttggcaattttgccag |
259 |
Q |
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| T |
6133267 |
aaggggaacacatattttgtcctttcttttcaacacaaacacacaattgatggcgttcagtctcacaattttggcaattttgccag |
6133352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 383 - 454
Target Start/End: Complemental strand, 6052391 - 6052320
Alignment:
| Q |
383 |
tacgaattagcgatatggtggagaagagcatcggtagcaaaattgtcgatgttgatatgaattatgtggccg |
454 |
Q |
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| T |
6052391 |
tacgaattagcgatacggtggagaagatcatcagtaccaaaatactcgatgttgatatcaattatgtggccg |
6052320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 6043179 - 6043027
Alignment:
| Q |
20 |
tggtaagtttagttatctatctaaaaatgtcaaatttcgtatttataaatcacacattgacattttataatataaacagaagcactacaaactagtctgt |
119 |
Q |
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| T |
6043179 |
tggtaactttagttaacta-ctagcaatgccaaattttgtatttataaaccacacaggaacattttata--ataaacaaaagcaccataaactaatttgt |
6043083 |
T |
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| Q |
120 |
attacaaacacgtgcaagttttcacttttggcgataaatatatcacaaacataaaa |
175 |
Q |
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||| |||||||| | || |||||||||| |||||||| || |||||| | |||||| |
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| T |
6043082 |
attgcaaacacgagaaaattttcactttcggcgataactaaatcacacaaataaaa |
6043027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 6046417 - 6046381
Alignment:
| Q |
37 |
tatctaaaaatgtcaaatttcgtatttataaatcaca |
73 |
Q |
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| T |
6046417 |
tatctaaaaatgtcaaattttgtatttatatatcaca |
6046381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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