View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18677_low_6 (Length: 420)

Name: NF18677_low_6
Description: NF18677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18677_low_6
NF18677_low_6
[»] chr8 (5 HSPs)
chr8 (15-413)||(14004083-14004475)
chr8 (15-413)||(5766323-5766721)
chr8 (55-181)||(34935748-34935874)
chr8 (252-353)||(17635611-17635712)
chr8 (252-353)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (27-312)||(1481684-1481963)
chr4 (255-409)||(8186317-8186471)
chr4 (264-356)||(661855-661947)
chr4 (256-356)||(55907634-55907734)
[»] chr6 (5 HSPs)
chr6 (252-335)||(7132323-7132406)
chr6 (252-335)||(7135246-7135329)
chr6 (252-335)||(7138169-7138252)
chr6 (295-403)||(6403528-6403636)
chr6 (252-356)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (256-356)||(1036570-1036670)
[»] chr1 (2 HSPs)
chr1 (160-193)||(30827961-30827994)
chr1 (271-355)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 14004475 - 14004083
Alignment:
Q  15 aaaaataacgacgatgatgaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtc 114  Q
    ||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14004475 aaaaataacgacgatgatgaccaccg------ctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaaccgtcacaaattctgtc 14004382  T
Q  115 taactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004381 taactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcga 14004282  T
Q  215 tgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14004281 tgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttc 14004182  T
Q  315 tctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgcta 413  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004181 tctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgcta 14004083  T

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Target: chr8; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 5766323 - 5766721
Alignment:
Q  15 aaaaataacgacgatgatgaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtc 114  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5766323 aaaaataacgacgatgatgaccaccgtaagcggtatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaaccgtcacaaattctgtc 5766422  T
Q  115 taactatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcga 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  5766423 taactatcttgtatccagccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattacggtgacctaga 5766522  T
Q  215 tgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttc 314  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766523 tgcacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttc 5766622  T
Q  315 tctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgcta 413  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  5766623 tctcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagcactgatatccacctcattgctgatacttttcctttgcta 5766721  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 34935748 - 34935874
Alignment:
Q  55 agtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatcttgtatccaaccctacctgtcctccctggcct 154  Q
    ||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||| ||| ||||| |   ||| |||||| |||  ||| ||| ||||    
T  34935748 agtctctctctgtctcctccaaacacttcctctccgtcaccaaccgtcacaaattctctctcactatttctgatcaaaccctcccttcccttcctcgcct 34935847  T
Q  155 attacaaaggttcaccaaactcacctc 181  Q
     || |||||||| ||||| ||||||||    
T  34935848 cttccaaaggtttaccaacctcacctc 34935874  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 353
Target Start/End: Original strand, 17635611 - 17635712
Alignment:
Q  252 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 351  Q
    ||||||| ||| |||||||| ||||||||||||| | ||||  ||||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||    
T  17635611 aaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T
Q  352 cc 353  Q
    ||    
T  17635711 cc 17635712  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 353
Target Start/End: Original strand, 17642890 - 17642991
Alignment:
Q  252 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 351  Q
    ||||||||||| |||||||| |||||||| |||| | ||||  | ||||| || | ||||||||| | ||| ||||||||||||||||| || | |||||    
T  17642890 aaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgtt 17642989  T
Q  352 cc 353  Q
    ||    
T  17642990 cc 17642991  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 27 - 312
Target Start/End: Complemental strand, 1481963 - 1481684
Alignment:
Q  27 gatgatgaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatcttgt 126  Q
    ||||| |||||||| || |||||  |||||||||| || ||||| ||||||||||||||||||||||||||| || ||||||||| ||| ||||||| |     
T  1481963 gatgacgaccaccggaaacgctacatgaagtctctctcagtcgcttcaaaacacttcctctccgtcaccaacagttacaaattctctctcactatctggc 1481864  T
Q  127 atccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttac 226  Q
    || |||||   | |  ||| ||  ||||  |||||||||||||||| ||||||||  | ||||| || | ||| ||   | |||||||||| ||||| ||    
T  1481863 attcaacc---cgttaccttccacgcctcctacaaaggttcaccaatctcacctcttttgacctttccttctactactttaacctcgatgcgcttctcac 1481767  T
Q  227 tcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctt 312  Q
     ||||||||  | ||||||   || |||||||||||||||||| | || |||||||||| |||||| |||||||| ||||||||||    
T  1481766 ccaaatctcctgtttccca---ttgaaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagctt 1481684  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 409
Target Start/End: Original strand, 8186317 - 8186471
Alignment:
Q  255 ctcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttcca 354  Q
    |||||||| |||||||| || ||| ||| || | ||||||| ||||| ||||||| | |||| || || |||||||||||||||||||| |  |||||||    
T  8186317 ctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttcca 8186416  T
Q  355 accttaattctcttaatagcactgatctccatctcattgctgattgttttccttt 409  Q
    || || | ||| | |||||||||||  ||   ||||| || ||||||||||||||    
T  8186417 acattgaatctatcaatagcactgacatcttcctcatcgccgattgttttccttt 8186471  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 661947 - 661855
Alignment:
Q  264 ctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaac 356  Q
    |||||||| |||||||||  || | |||| ||||||||||||||||||||||| |   | ||||||||||| ||||| || ||||||| ||||    
T  661947 ctcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttacaac 661855  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 55907634 - 55907734
Alignment:
Q  256 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 355  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||  || || |||||||||||    
T  55907634 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T
Q  356 c 356  Q
    |    
T  55907734 c 55907734  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 7132406 - 7132323
Alignment:
Q  252 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 335  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7132406 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 7135329 - 7135246
Alignment:
Q  252 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 335  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7135329 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 7138252 - 7138169
Alignment:
Q  252 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 335  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7138252 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 6403636 - 6403528
Alignment:
Q  295 ctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgc 394  Q
    ||||||| |||||||||||||| || ||  | || ||||||||||| |||  ||||||| || || |||||||||||||| || |||||   ||||||||    
T  6403636 ctaatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttccgacattgattctcttaatagctctcatctcttactcattgc 6403537  T
Q  395 tgattgttt 403  Q
     ||||||||    
T  6403536 cgattgttt 6403528  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 8913375 - 8913479
Alignment:
Q  252 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 351  Q
    |||||||||||||||||| | |||||||||   | | ||||||||||||| |||| || ||| |||   || ||||||||||||||||| || | |||||    
T  8913375 aaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T
Q  352 ccaac 356  Q
    |||||    
T  8913475 ccaac 8913479  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
Q  256 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 355  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||| || || |||||||||||    
T  1036570 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T
Q  356 c 356  Q
    |    
T  1036670 c 1036670  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 30827994 - 30827961
Alignment:
Q  160 aaaggttcaccaaactcacctccctcgacctctc 193  Q
    ||||||||||||| ||||||||||||||||||||    
T  30827994 aaaggttcaccaatctcacctccctcgacctctc 30827961  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 7555280 - 7555196
Alignment:
Q  271 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 355  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| |  || ||||||||||| |||||||| | |||||||||    
T  7555280 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

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