View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_11 (Length: 573)
Name: NF18678_high_11
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 47 - 565
Target Start/End: Complemental strand, 44672786 - 44672268
Alignment:
| Q |
47 |
cctaacactgcacgaacccccaatatattagtaatactgtttttcaactcatctgaaacgttcctactgtaaaaaatctcggacttcggtaaactgttag |
146 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44672786 |
cctaacactgcacgaacgcccaatatattagcaatactgtttttcaactcatctgaaacgttcctactgtaaaaaatctcgaacttcggtaaactgttag |
44672687 |
T |
|
| Q |
147 |
ctcgccccacacattctatatttgttctttacacctttactttactatttcagtttcacttgttttttcattgttccttgtgttacaatgaatcttgtac |
246 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44672686 |
ctcgccccgcacattctatatttgttctttacacctttactttactatttcagtttcacttgttttttcattgttccttgtgttacaatgaatcttgtac |
44672587 |
T |
|
| Q |
247 |
ctcctacgttaaattgaatttcattttatggactgcctataacaatgacgacctattttggtaattcaaacatgtttacgtgccatttgcctcttgcata |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44672586 |
ctcctacgttaaattgaatttcattttatggactgcctataacaatgacgacctattttggtaattcaaacatgtttccgtgccatttgcctcttgcata |
44672487 |
T |
|
| Q |
347 |
caattgattaaaataaaaacaacaaattctctaaatataagattcaacaaccacagaaaccaacaccttaaatcaatataatgctgagctggttctctca |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44672486 |
caattgattaaaataaaaacaacaaattctctaaatataagattcaacaaccacagaaaccaacaccttaaatcaatataatgctgagctggttctctca |
44672387 |
T |
|
| Q |
447 |
aagtttatgtacaattatagtatataaacttgttttcttcatgtattttctatcacaaatccccacagttcaatatcccctgccaaagcagggggtgatt |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44672386 |
aagtttatgtacaattatagtatataaacttgttttcttcatgtattttctatcacaaatccccacagttcaatatcccctgccaaagcagggggtgatt |
44672287 |
T |
|
| Q |
547 |
ataaccttttattcatctc |
565 |
Q |
| |
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||||||||||||||||||| |
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| T |
44672286 |
ataaccttttattcatctc |
44672268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 26401831 - 26401699
Alignment:
| Q |
9 |
tcccaatcatagacggcatacctaaatactttccggtgcctaacactgcacgaacccccaatatattagtaatactgtttttcaactcatctgaaacgtt |
108 |
Q |
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||||||||||||| ||||| ||||||||||| ||||| ||||| || ||||| ||| | || || || |||||||||||||||||| |||||| || || |
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| T |
26401831 |
tcccaatcatagatggcattcctaaatacttaccggtacctaaaacagcacggaccgctaaaatgtttgtaatactgtttttcaacgcatctggcacatt |
26401732 |
T |
|
| Q |
109 |
cctactgtaaaaaatctcggacttcggtaaact |
141 |
Q |
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| T |
26401731 |
cctactgtagaaaatttctgacttcggtaaact |
26401699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44673998 - 44673948
Alignment:
| Q |
1 |
tcggttcctcccaatcatagacggcatacctaaatactttccggtgcctaa |
51 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44673998 |
tcggttcctcctaatcatagacggcatacctaaatactttccggtgcctaa |
44673948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 9529678 - 9529544
Alignment:
| Q |
7 |
cctcccaatcatagacggcatacctaaatactttccggtgcctaacactgcacgaacccccaatatattagtaatactgtttttcaactcatctgaaacg |
106 |
Q |
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||||| ||||||||| ||||| |||||||||| ||||| ||||| || ||||||||| | || || || |||||| |||||||||| |||||| || |
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| T |
9529678 |
cctcctaatcatagatggcatttctaaatacttgccggtacctaaaacagcacgaaccgctaaaatgtttgtaatattgtttttcaatgcatctggcaca |
9529579 |
T |
|
| Q |
107 |
ttcctactgtaaaaaatctcggacttcggtaaact |
141 |
Q |
| |
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||||||||||| ||||| || ||||||||||||| |
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| T |
9529578 |
ttcctactgtagaaaatttctaacttcggtaaact |
9529544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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