View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18678_high_12 (Length: 564)
Name: NF18678_high_12
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 13 - 548
Target Start/End: Original strand, 31652745 - 31653280
Alignment:
| Q |
13 |
aatatggtacttatatcaactaaaccaccaaaggagtatcctcaaactgattgtgctaacaatcatgtgttaaaaggaagtgaatcgtctgaagatgaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
31652745 |
aatatggtacttatatcaactaaaccaccaaaggagtttcctcaaactgattgtgctaacaatcatgtgtcaaacggaagtgaatcgtctgaagatgaaa |
31652844 |
T |
|
| Q |
113 |
catggggacaggaacaacaagattctatggctaaacagaaaaatgaggacatggtaaggaataggaaatcatatatccatcatttcacttttcagaaaag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652845 |
catggggacaggaacaacaagattctatggctatacagaaaaatgaggacatggtaaggaataggaaatcatatatccatcatttcacttttcagaaaag |
31652944 |
T |
|
| Q |
213 |
aaaaagaaatctgaatcatctgttctatggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652945 |
aaaaagaaatctgaatcatctgttctatggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgc |
31653044 |
T |
|
| Q |
313 |
gcgaatacagacatttgattacaatccatggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31653045 |
gcgaatacagacatttgattacaatccatggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagttt |
31653144 |
T |
|
| Q |
413 |
gagtgagaagaaactcaaatctgcttctgagtctcatggagccgagctaattaggtacctatcaaactttcacgaacattagcatttctacagatgctga |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31653145 |
gagtgagaagaaactcaaatctgcttctgagtctcatggagccgagctaattaggtacctatcaaactttcacgaacattagcatttctacagatgctga |
31653244 |
T |
|
| Q |
513 |
attaaacctaccatatggcttgacatggattgttat |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31653245 |
attaaacctaccatatggcttgacatggattgttat |
31653280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 239 - 503
Target Start/End: Original strand, 31703301 - 31703565
Alignment:
| Q |
239 |
atggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgcgcgaatacagacatttgattacaatc |
338 |
Q |
| |
|
|||||||| ||||||| |||||| | ||||||||| | ||||| | || ||||||||||||||||| ||| | |||||| |||||||||| |||| |
|
|
| T |
31703301 |
atggcagagtgtaaatgatgaagacaaggaagatataaatacaaatgctttcaaatcaaaccagcaagttgcacttcaatacaaacatttgattgcaatt |
31703400 |
T |
|
| Q |
339 |
catggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagtttgagtgagaagaaactcaaatctgctt |
438 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31703401 |
catggtggaaaatcagaaggtaacatgaaggatatactaaaagttgatggtggtaaagtcagaaggctaagtttgagtgagaagaaactcaaaactgctt |
31703500 |
T |
|
| Q |
439 |
ctgagtctcatggagccgagctaattaggtacctatcaaactttcacgaacattagcatttctac |
503 |
Q |
| |
|
|| | |||||||| | || |||||||||| |||||||||||| | || |||||||||||||| |
|
|
| T |
31703501 |
ctaaatctcatgggcctgacctaattaggtgcctatcaaacttacttgacaattagcatttctac |
31703565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 31702922 - 31703027
Alignment:
| Q |
13 |
aatatggtacttatatcaactaaaccaccaaaggagtatcctcaaactgattgtgctaacaatcatgtgttaaaaggaagtgaatcgtctgaagatgaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||| |||| ||||| ||| | |||||| |||||||| ||| ||||||| |||||||| ||| |
|
|
| T |
31702922 |
aatatggtacttatatcaactaaatcaccaaaagaatataatcaatctgatagtgtcagcaatcaggtgttaaatggatgtgaatcatctgaagacgaat |
31703021 |
T |
|
| Q |
113 |
catggg |
118 |
Q |
| |
|
|||||| |
|
|
| T |
31703022 |
catggg |
31703027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University