View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_13 (Length: 550)
Name: NF18678_high_13
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 21 - 540
Target Start/End: Original strand, 43639726 - 43640245
Alignment:
| Q |
21 |
aggtatagaacaattcaaacttaaacaatcaccaccgttcaaaaaatcttcatcatcacgacaaaaattttgccaaccatcatcaatgattacaaaactt |
120 |
Q |
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| T |
43639726 |
aggtatagaacaattcaaacttaaacaatcaccaccgttcaaaaaatcttcatcatcacgacaaaaattttgccaaccatcatcaatgattacaaaactt |
43639825 |
T |
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| Q |
121 |
ggaggacacccaccttctactaaacccttaacaccttctttcactccttgagggtctaccttaaggtaaaatgcatcccatgtacaccatccaaatttat |
220 |
Q |
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| T |
43639826 |
ggaggacacccaccttctactaaacccttaacaccttctttcactccttgagggtccaccttaaggtaaaatgcatcccatgtacaccatccaaatttat |
43639925 |
T |
|
| Q |
221 |
caactatatcaggtattgttttttcttctagaagtttgaatgttccaaggtggtctctaacaaccttaatcgcttcgttcattaatatataaggatcgaa |
320 |
Q |
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| T |
43639926 |
caactatatcaggtattgttttttcttctagaagtttgaatgttccaaggtggtctctaacaaccttaatcgcttcgttcattaatatataaggatcgaa |
43640025 |
T |
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| Q |
321 |
gtttgcatgaatgtataaacatgttttgaaagttgattcaacaacacgtgtggatccactttccatgcaaatgtccacgttgttattgttttctcctggt |
420 |
Q |
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| T |
43640026 |
gtttgcatgaatgtataaacatgttttgaaagttgattcaacaacacgtgtggatccactttccatgcaaatgtccacgttgttattgttttctcctggt |
43640125 |
T |
|
| Q |
421 |
tgaagacaagctctgaaagaaccttcgatgagtggtaaaagaagaacgtagggacgttgtttaacggtgtcgttttcaagtataatcatttgagtttcgt |
520 |
Q |
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| T |
43640126 |
tgaagacaagctctgaaagaaccttcgatgagtggtaaaagaagaacgtagggacgttgtttaacggtgtcgttttcaagtataatcatttgagtttcgt |
43640225 |
T |
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| Q |
521 |
tttctatgtcattgcctttg |
540 |
Q |
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| T |
43640226 |
tttctatgtcattgcctttg |
43640245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 90 - 254
Target Start/End: Complemental strand, 486576 - 486412
Alignment:
| Q |
90 |
ttgccaaccatcatcaatgattacaaaacttggaggacacccaccttctactaaacccttaacaccttctttcactccttgagggtctaccttaaggtaa |
189 |
Q |
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|||||||||||||||||| | ||||| | || ||||| ||||| || |||| ||||||||||||| ||||||||||||| ||||||||| ||| |
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| T |
486576 |
ttgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgagggtgtaccttaagataa |
486477 |
T |
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| Q |
190 |
aatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttcttctagaag |
254 |
Q |
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| T |
486476 |
aatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaag |
486412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 36432407 - 36432444
Alignment:
| Q |
187 |
taaaatgcatcccatgtacaccatccaaatttatcaac |
224 |
Q |
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| T |
36432407 |
taaaaagcatcccatgtacaccaaccaaatttatcaac |
36432444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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