View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_16 (Length: 525)
Name: NF18678_high_16
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_16 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Original strand, 34461282 - 34461789
Alignment:
| Q |
19 |
gtattaatattatagttcaattttctttgtagaaagttgttaaatagtaattagtgttactttaactaatacaaatattcctcctttatcatatgcagtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34461282 |
gtattaatattatagttcaattttctttgtagaaagttgttaaatagttattagtgttactttaactaatacaaatattcctcctttatcatatgtagtg |
34461381 |
T |
|
| Q |
119 |
gttgtaaacttgtaatgtacctaacttaatttatattccatatacaatccatgcaaaggtagattcaaca---------tttaattttgttcatcacagg |
209 |
Q |
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| T |
34461382 |
gttgtaaacttgtaatgtacctaacttaatttatattccatatacaaaccatgcaaaggtagattcaacaaaatcaacatttcattttgttcatcacagg |
34461481 |
T |
|
| Q |
210 |
acattgaaaagaagaacatcctagcagttcaaacactacgtaacctaataatgggatcaacacttatggcaactacatccattcttctctcagctggttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34461482 |
acattgaaaagaagaacatcctagcagttcaaacactacgtaacctaataatgggatcaacacttatggcaactacatccattcttctctcagctggttt |
34461581 |
T |
|
| Q |
310 |
agcagcagtgataagcagcacatacagtgtgaagaagcctctcaatgattccatttatggagctcatagtgaatttatggtagccctaaaatatgtcaca |
409 |
Q |
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| T |
34461582 |
ggcagcagtgataagcagcacatacagtgtgaagaagcctctcaatgattccatttatggagctcatagtgaatttatggtagccctaaaatatgtcaca |
34461681 |
T |
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| Q |
410 |
ctcctaactatattcttattctcatttttctgtcacacattgtccattaggtttttcaaccaagtaagcatcctcatttgcacaccacaagatgtcttgt |
509 |
Q |
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| T |
34461682 |
ctcctaactatattcttattctcatttttctgtcacacattgtccattaggtttttcaaccaagtaagcatcctcatttgcacaccacaagatgtcttgt |
34461781 |
T |
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| Q |
510 |
cctatgct |
517 |
Q |
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| T |
34461782 |
cctatgct |
34461789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 435
Target Start/End: Complemental strand, 1149848 - 1149722
Alignment:
| Q |
309 |
tagcagcagtgataagcagcacatacagtgtgaagaagcctctcaatgattccatttatggagctcatagtgaatttatggtagccctaaaatatgtcac |
408 |
Q |
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| T |
1149848 |
tagcagcagttataagcagcacatatagtgtgaaaaagccactaaatgatgcaatttatggagcacatggtgaattcatggttgcactaaaatatgtctc |
1149749 |
T |
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| Q |
409 |
actcctaactatattcttattctcatt |
435 |
Q |
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| T |
1149748 |
actcctcacaattttcctcttctcatt |
1149722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 206 - 503
Target Start/End: Original strand, 21464 - 21761
Alignment:
| Q |
206 |
caggacattgaaaagaagaacatcctagcagttcaaacactacgtaacctaataatgggatcaacacttatggcaactacatccattcttctctcagctg |
305 |
Q |
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||||| ||||||||||||||||| ||| || ||||| || || || || ||||||||||||||||||||||| |||||||| || || | ||||||| |
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| T |
21464 |
caggatattgaaaagaagaacattttagtagctcaaagtcttcgaaatcttataatgggatcaacacttatggccactacatcaatcctcttatcagctg |
21563 |
T |
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| Q |
306 |
gtttagcagcagtgataagcagcacatacagtgtgaagaagcctctcaatgattccatttatggagctcatagtgaatttatggtagccctaaaatatgt |
405 |
Q |
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| T |
21564 |
gcttagccgctatcataagcagtacttatagtgtgaaaaagcctcttgacgatgttctctatggcgctcacggcgaatttatggaagccctaaaatatgt |
21663 |
T |
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| Q |
406 |
cacactcctaactatattcttattctcatttttctgtcacacattgtccattaggtttttcaaccaagtaagcatcctcatttgcacaccacaagatg |
503 |
Q |
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| T |
21664 |
gacacttcttaccatattcttattctcatttttctgccacactctttcaattaggtttctcaaccaattaagcctccttatttgcacaccacaagatg |
21761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 24450941 - 24451035
Alignment:
| Q |
245 |
ctacgtaacctaataatgggatcaacacttatggcaactacatccattcttctctcagctggtttagcagcagtgataagcagcacatacagtgt |
339 |
Q |
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||||||||| ||||||||||| |||| || ||| |||| ||||||||||| || | |||||||||| |||| | ||||| ||||| || ||||| |
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| T |
24450941 |
ctacgtaacttaataatgggaacaaccctaatgtcaacaacatccattctcctatgtgctggtttaggagcaattataagtagcacttatagtgt |
24451035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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