View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18678_high_24 (Length: 460)
Name: NF18678_high_24
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Original strand, 55895750 - 55896181
Alignment:
| Q |
10 |
ataatactctaagaatttttattcatatgtatgatttttaacgtagatttgattaaaagtcaaatatttctaatgatcaagcagttatgagtaaaaattc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55895750 |
ataatactctaagaatttttattcatatgtatgatttttaacgtagatttgattaaaagtcaaatatttctaatgatcaagcagttatgagtaaaaattc |
55895849 |
T |
|
| Q |
110 |
ttattttagtgcatatcaattaaatccttaaaacagtaggaacttacatttcttcttctttgacgcgaaccaatcccacttgcagcttgggaggtaccag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55895850 |
ttattttagtgcatatcaattaaatccttaaaacagtatgaacttacatttcttcttctttgacgcgaaccaatcccacttgcagcttgggaggtaccag |
55895949 |
T |
|
| Q |
210 |
aaacaagatccaagacttccttggagttttggtgagaagattcatggctatgttcttgaggagtagaatcagaagagagaactccatcttgccatacatg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55895950 |
aaacaagatccaagacttccttggagttttggtgagaagattcatggctatgttcttgaggagtagaatcagaagagagaactccatcttgccatacatg |
55896049 |
T |
|
| Q |
310 |
aaccaaagaggttgttccatttggaagggtcaaagtagcaaaaatagtaacctcgttattctgatacgtggcagacaacccagaaacaggataactaatg |
409 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55896050 |
aacaaaagaggttgttccatttggaagggtcaaagtagcaaaaatagtaacctcgttattctgatacgtggcagacaacccagaaacaggataactaatg |
55896149 |
T |
|
| Q |
410 |
gttccttcttgcaaccgtgtgcttgtgtctat |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
55896150 |
gttccttcttgcaaccgtgtgcttgtgtctat |
55896181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Complemental strand, 1029204 - 1028783
Alignment:
| Q |
10 |
ataatactct-aagaatttttattcatatgtatgatttttaacgtagatttgattaaaagtcaaatatttctaatgatcaagcagttatgagtaaaaatt |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1029204 |
ataatactcttaagaatttttattcatatgtatgatttttaacgtagatttgattaaaagtcaaatatttctaatgatcaagcagttatgagtaaaaatt |
1029105 |
T |
|
| Q |
109 |
cttattttagtgcatatcaattaaatccttaaaacagtaggaacttacatttcttcttctttgacgcgaaccaatcccacttgcagcttgggaggtacca |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1029104 |
cttattttagtgcatatcaattaaat----------gtatgaacttacatttcttcttctttgacgcgaaccaatcccacttgcagcttgggaggtacca |
1029015 |
T |
|
| Q |
209 |
gaaacaagatccaagacttccttggagttttggtgagaagattcatggctatgttcttgaggagtagaatcagaagagagaactccatcttgccatacat |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1029014 |
gaaacaagatccaagacttccttagagttttggtgagaagattcatggctatgttcttgaggagtagaatcagaagagagaactccatcttgccatacat |
1028915 |
T |
|
| Q |
309 |
gaaccaaagaggttgttccatttggaagggtcaaagtagcaaaaatagtaacctcgttattctgatacgtggcagacaacccagaaacaggataactaat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1028914 |
gaaccaaagaggttgttccatttggaagggtcaaagtagcaaaaatagtaaccttgttattctgatatgtggcagacaacccagaaacaggataactaat |
1028815 |
T |
|
| Q |
409 |
ggttccttcttgcaaccgtgtgcttgtgtcta |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1028814 |
ggttccttcttgcaaccgtgtgcttgtgtcta |
1028783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University