View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_high_25 (Length: 458)

Name: NF18678_high_25
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_high_25
NF18678_high_25
[»] chr6 (5 HSPs)
chr6 (17-452)||(20206183-20206619)
chr6 (17-452)||(22100206-22100642)
chr6 (108-151)||(32342603-32342646)
chr6 (94-154)||(20067905-20067965)
chr6 (405-442)||(21972754-21972791)
[»] chr8 (2 HSPs)
chr8 (108-154)||(32166661-32166707)
chr8 (111-159)||(33897743-33897791)
[»] chr7 (3 HSPs)
chr7 (108-169)||(29152338-29152399)
chr7 (111-152)||(22593597-22593638)
chr7 (108-138)||(27651382-27651412)
[»] chr2 (6 HSPs)
chr2 (103-151)||(28282822-28282870)
chr2 (108-154)||(16576251-16576297)
chr2 (104-154)||(16863455-16863505)
chr2 (108-181)||(38576767-38576840)
chr2 (108-154)||(28282653-28282699)
chr2 (94-154)||(2248962-2249022)
[»] chr5 (7 HSPs)
chr5 (108-159)||(37077763-37077814)
chr5 (108-154)||(7215322-7215368)
chr5 (103-151)||(14138543-14138591)
chr5 (104-154)||(972828-972878)
chr5 (108-154)||(2243342-2243388)
chr5 (108-154)||(17736780-17736826)
chr5 (104-154)||(37077652-37077701)
[»] chr1 (8 HSPs)
chr1 (108-151)||(42819624-42819667)
chr1 (33-154)||(52432587-52432710)
chr1 (108-154)||(46080974-46081020)
chr1 (104-153)||(35660759-35660808)
chr1 (104-151)||(35956982-35957029)
chr1 (108-159)||(52432836-52432887)
chr1 (108-154)||(10775166-10775212)
chr1 (108-140)||(12144973-12145005)
[»] scaffold0264 (1 HSPs)
scaffold0264 (384-434)||(19311-19361)
[»] chr3 (4 HSPs)
chr3 (110-151)||(42091820-42091861)
chr3 (103-154)||(54437804-54437855)
chr3 (104-154)||(54437636-54437686)
chr3 (108-157)||(31758246-31758294)
[»] chr4 (3 HSPs)
chr4 (108-154)||(25062493-25062539)
chr4 (94-154)||(20512853-20512913)
chr4 (108-148)||(54000079-54000119)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 20206619 - 20206183
Alignment:
Q  17 acaaacatgtaaatttgttttttctacattacctgctgatgaattagacgtaatttacctctgtcaaaaa-tatcatctttcttcttatttattcttaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20206619 acaaacatgtaaatttgttttttctacattacctgctgatgaattagacgtaatttacctctgtcaaaaaatatcatctttcttcttatttattcttaca 20206520  T
Q  116 atcaattatcattttcatctcaataacatcaaacttcttaatttaatatgtgatctctatctcctttatttcataggcaagtcctacttgtcattaaggt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20206519 atcaattatcattttcatctcaataacatcaaacttcttaatttaatatgtgatctctatctcctttatttcatagtcaagtcctacttgtcattaaggt 20206420  T
Q  216 aagttactcaaattcatc-aggggataatgtatgactaaaggataaggattactttaagagaccacctagagtcttcagctttannnnnnnnnnnnnaaa 314  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||             |||    
T  20206419 aagttacccaaattcatcaaggggataatgtatgactaaagtataaggattactttaaaagaccacctagagtcttcagcttta-ttttttttttttaaa 20206321  T
Q  315 ggagactgttgacctttatnnnnnnnngctgtataaaatagtgtctaacnnnnnnnacatatctgtattatcatttcaaatcaaacagactcattaaaaa 414  Q
    |||||||||||||||||||        ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  20206320 ggagactgttgacctttataaaaaaaagctgtataaaatagtgtctaactttttttacatatctgtattatcatttcaaatcaaacagactcattaaaaa 20206221  T
Q  415 agaaattccatggcttactctaaaattcttcatctctc 452  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  20206220 agaaattccatggcttactctaaaattcttcatttctc 20206183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 22100642 - 22100206
Alignment:
Q  17 acaaacatgtaaatttgttttttctacattacctgctgatgaattagacgtaatttacctctgtcaaaaa-tatcatctttcttcttatttattcttaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22100642 acaaacatgtaaatttgttttttctacattacctgctgatgaattagacgtaatttacctctgtcaaaaaatatcatctttcttcttatttattcttaca 22100543  T
Q  116 atcaattatcattttcatctcaataacatcaaacttcttaatttaatatgtgatctctatctcctttatttcataggcaagtcctacttgtcattaaggt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22100542 atcaattatcattttcatctcaataacatcaaacttcttaatttaatatgtgatctctatctcctttatttcatagtcaagtcctacttgtcattaaggt 22100443  T
Q  216 aagttactcaaattcatc-aggggataatgtatgactaaaggataaggattactttaagagaccacctagagtcttcagctttannnnnnnnnnnnnaaa 314  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||             |||    
T  22100442 aagttacccaaattcatcaaggggataatgtatgactaaagtataaggattactttaaaagaccacctagagtcttcagcttta-ttttttttttttaaa 22100344  T
Q  315 ggagactgttgacctttatnnnnnnnngctgtataaaatagtgtctaacnnnnnnnacatatctgtattatcatttcaaatcaaacagactcattaaaaa 414  Q
    |||||||||||||||||||        ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  22100343 ggagactgttgacctttataaaaaaaagctgtataaaatagtgtctaactttttttacatatctgtattatcatttcaaatcaaacagactcattaaaaa 22100244  T
Q  415 agaaattccatggcttactctaaaattcttcatctctc 452  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  22100243 agaaattccatggcttactctaaaattcttcatttctc 22100206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 32342603 - 32342646
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaactt 151  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  32342603 ttcttacaatcaattatcattttcatctcaaaaacatcaaactt 32342646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 20067905 - 20067965
Alignment:
Q  94 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    ||||||| | |||||||||| ||||| |||||||||||||||||||||||| | |||||||    
T  20067905 tttcttcatttttattcttagaatcagttatcattttcatctcaataacattatacttctt 20067965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 21972791 - 21972754
Alignment:
Q  405 tcattaaaaaagaaattccatggcttactctaaaattc 442  Q
    |||||||||||||||||||||||||||||||| |||||    
T  21972791 tcattaaaaaagaaattccatggcttactctacaattc 21972754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 32166707 - 32166661
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  32166707 ttcttactatcaattatcattttcatctcaagaacatcaaacttctt 32166661  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 33897743 - 33897791
Alignment:
Q  111 ttacaatcaattatcattttcatctcaataacatcaaacttcttaattt 159  Q
    |||| ||||||||  ||||||||||||| ||||||||| ||||||||||    
T  33897743 ttactatcaattactattttcatctcaaaaacatcaaaattcttaattt 33897791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 29152399 - 29152338
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaatttaatatgtgat 169  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||| ||| || |||||||    
T  29152399 ttcttacaatcagttactattttcatctcaataacatcaaacttcttcattcaacatgtgat 29152338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 22593638 - 22593597
Alignment:
Q  111 ttacaatcaattatcattttcatctcaataacatcaaacttc 152  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  22593638 ttacaatcaattgtcattttcatctcaagaacatcaaacttc 22593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 138
Target Start/End: Complemental strand, 27651412 - 27651382
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaa 138  Q
    |||||||||||||||||||||||||||||||    
T  27651412 ttcttacaatcaattatcattttcatctcaa 27651382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 28282822 - 28282870
Alignment:
Q  103 atttattcttacaatcaattatcattttcatctcaataacatcaaactt 151  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  28282822 attttttcttacaatcaattatcattttcatctccataatatcaaactt 28282870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 16576251 - 16576297
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||    
T  16576251 ttcttacaatcaattaccattttcctctcaagaacatcaaacttctt 16576297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 16863455 - 16863505
Alignment:
Q  104 tttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||| |||||    
T  16863455 tttattcttacaatcagttaccattttcatctcaagaacatcaaatttctt 16863505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 38576840 - 38576767
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaatttaatatgtgatctctatctcctt 181  Q
    |||||||||||| ||| ||||||||||||||||  |||||||||||| ||| || ||||| |||| || |||||    
T  38576840 ttcttacaatcagttaccattttcatctcaatataatcaaacttcttcattcaacatgtgttctccatatcctt 38576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 28282653 - 28282699
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    ||||||||||| | || |||||||||||| |||||||||||||||||    
T  28282653 ttcttacaatcgaataccattttcatctccataacatcaaacttctt 28282699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 2249022 - 2248962
Alignment:
Q  94 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    ||||||| | |||||||||| ||| | ||| |||||||||||||| ||||| |||||||||    
T  2249022 tttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttctt 2248962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 37077763 - 37077814
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaattt 159  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  37077763 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaattt 37077814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 7215368 - 7215322
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    ||||||||||||| || |||||||||||||| |||||||||||||||    
T  7215368 ttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 14138543 - 14138591
Alignment:
Q  103 atttattcttacaatcaattatcattttcatctcaataacatcaaactt 151  Q
    ||||||||||||||||||||| ||||||||||| || || |||||||||    
T  14138543 atttattcttacaatcaattaccattttcatcttaagaatatcaaactt 14138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 972828 - 972878
Alignment:
Q  104 tttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||| ||| ||| | |||||||||||||||||| |||||||||||||||    
T  972828 tttatttttaaaattagttatcattttcatctcaagaacatcaaacttctt 972878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 2243388 - 2243342
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||||||| | ||| |||||||||||||| |||||||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttctt 2243342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 17736826 - 17736780
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    ||||||||| |||||| ||||||||||||||||| || |||||||||    
T  17736826 ttcttacaaccaattaccattttcatctcaataatattaaacttctt 17736780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 37077652 - 37077701
Alignment:
Q  104 tttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||||||| ||||| |||||||||||||||||| ||||| |||||||||    
T  37077652 tttattctta-aatcagttatcattttcatctcaagaacattaaacttctt 37077701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 42819624 - 42819667
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaactt 151  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  42819624 ttcttacaatcaattatcattttcatctcaagaacataaaactt 42819667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 52432587 - 52432710
Alignment:
Q  33 gttttttctacattacctgctgatgaattagacgtaatttacctctgtcaaa-aatatcatctt-tcttcttatttattcttacaatcaattatcatttt 130  Q
    ||||||||||||||||||  ||||||||| |  ||||||||||  | ||||| ||||  ||| | | ||| | |||||||||| ||||||||| ||||||    
T  52432587 gttttttctacattacctcttgatgaatttggggtaatttaccattatcaaataataaaatcatattttcatctttattcttataatcaattaccatttt 52432686  T
Q  131 catctcaataacatcaaacttctt 154  Q
    |||||||| ||||| |||||||||    
T  52432687 catctcaagaacattaaacttctt 52432710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 46080974 - 46081020
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||||||||||||| |||||||||||||| ||||| |||||||||    
T  46080974 ttcttacaatcaattaccattttcatctcaagaacattaaacttctt 46081020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 35660759 - 35660808
Alignment:
Q  104 tttattcttacaatcaattatcattttcatctcaataacatcaaacttct 153  Q
    |||||||||| ||||||||| ||||||||| |||| ||||||||||||||    
T  35660759 tttattcttaaaatcaattaccattttcatttcaaaaacatcaaacttct 35660808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 35956982 - 35957029
Alignment:
Q  104 tttattcttacaatcaattatcattttcatctcaataacatcaaactt 151  Q
    |||||||||||||| ||||| |||||| ||||||| ||||||||||||    
T  35956982 tttattcttacaattaattaccatttttatctcaaaaacatcaaactt 35957029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 52432836 - 52432887
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaattt 159  Q
    |||||||||| | ||||||||||| |||||| ||||||||||||||| ||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattt 52432887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 10775166 - 10775212
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||| ||||||||| ||||||||||| || |||||||||||||||    
T  10775166 ttcttagaatcaattaccattttcatcttaagaacatcaaacttctt 10775212  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 12144973 - 12145005
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaata 140  Q
    ||||||||||||||||||||||| |||||||||    
T  12144973 ttcttacaatcaattatcatttttatctcaata 12145005  T

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Target: scaffold0264 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 19361 - 19311
Alignment:
Q  384 atcatttcaaatcaaacagactcattaaaaaagaaattccatggcttactc 434  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  19361 atcattgcaaatcaaacagactcaataagaaagaaattccatggcgtactc 19311  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 42091861 - 42091820
Alignment:
Q  110 cttacaatcaattatcattttcatctcaataacatcaaactt 151  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactt 42091820  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 54437804 - 54437855
Alignment:
Q  103 atttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||| |||||||||||| ||| |||||| ||||||| |||||||||||||||    
T  54437804 attttttcttacaatcagttaccattttaatctcaaaaacatcaaacttctt 54437855  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 54437636 - 54437686
Alignment:
Q  104 tttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||| ||||||  ||||| |||||||||||||||||||| |||||||||    
T  54437636 tttattattacaacaaattaccattttcatctcaataacattaaacttctt 54437686  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 31758246 - 31758294
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaat 157  Q
    |||||||||||||||| ||||||||||| || || |||||||||||||||    
T  31758246 ttcttacaatcaattaccattttcatcttaa-aatatcaaacttcttaat 31758294  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 25062493 - 25062539
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    |||||||||||||||| | |||||||||||| || ||||||||||||    
T  25062493 ttcttacaatcaattaccgttttcatctcaagaatatcaaacttctt 25062539  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 20512913 - 20512853
Alignment:
Q  94 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 154  Q
    ||||||| | |||||| ||| |||||||| |||||||||||| |  |||||||||||||||    
T  20512913 tttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttctt 20512853  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 54000119 - 54000079
Alignment:
Q  108 ttcttacaatcaattatcattttcatctcaataacatcaaa 148  Q
    ||||||| |||||||| |||||||||||||| |||||||||    
T  54000119 ttcttactatcaattaccattttcatctcaagaacatcaaa 54000079  T

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