View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_34 (Length: 412)
Name: NF18678_high_34
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_34 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 41 - 402
Target Start/End: Complemental strand, 44629991 - 44629627
Alignment:
| Q |
41 |
gtctaaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgtaacaaatacccctcattaccttaattagtcctaacatat |
140 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629991 |
gtctaaaatatgcgtggttataaaaatagacaaatacacccttcaaatttaaaacttatgtaacaaatacccctcattaccttaattagtcctaacatat |
44629892 |
T |
|
| Q |
141 |
gtaatttaatatgatgaagacaaatattcttcattcaacctgcaactctgaaactgtcataggcacataataacgcatcaaagcttctgtttctttttgt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629891 |
gtaatttaatatgatgaagacaaatattcttcattcaacctgcaactctgaaactgtcataggcacataataacgcatcaaagcttctgtttctttttgt |
44629792 |
T |
|
| Q |
241 |
atttcg---ctgcctctnnnnnnnttatgctaatctctctcttctggatttcattactctgtatcattttagatttcatcttccaaagcaagtcaaacag |
337 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44629791 |
atttcgctactgcctctaaaaaaaatatgctaatctctctcttctggatttcattactctgtatcattttagatttcatcttccaaagcaagtcaaaaag |
44629692 |
T |
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| Q |
338 |
aatactttagtatatatttcatgaatcaaataacactttaaaacaagccaagccaccgtcctttg |
402 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44629691 |
aatactttagtatatatttcatgaatcaattaacactttaaaacaagccaagccaccgtcctttg |
44629627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 47730095 - 47730012
Alignment:
| Q |
115 |
cattaccttaattagtcctaacatatgtaatttaatatgatgaagacaaatattcttcattcaacctgcaactctgaaactgtcata |
201 |
Q |
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| T |
47730095 |
cattaccttaattactcctaacatatataattaaatatcatgaaggcaaata---ttcattcaacctgcaactctgaaactgtcata |
47730012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 10036336 - 10036397
Alignment:
| Q |
41 |
gtctaaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgta |
102 |
Q |
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| T |
10036336 |
gtctaaaatttgtgtgattataaaaataggcaaatgcccccttcaaatttaaaacttatgta |
10036397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 24240821 - 24240879
Alignment:
| Q |
44 |
taaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgta |
102 |
Q |
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| T |
24240821 |
taaaatttttgtgattataaaaataggcaaatacccccctcaactttaaaacttatgta |
24240879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 25143533 - 25143568
Alignment:
| Q |
42 |
tctaaaatatgtgtgattataaaaatagacaaatac |
77 |
Q |
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| T |
25143533 |
tctaaaatctgtgtgattataaaaatagacaaatac |
25143568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 35237200 - 35237143
Alignment:
| Q |
44 |
taaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgta |
102 |
Q |
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| T |
35237200 |
taaaatatgtgtgattataaaaatagataaata-tcctctcaaatttaaaacttatgta |
35237143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 21268071 - 21268115
Alignment:
| Q |
70 |
acaaatacacccatcaaatttaaaacttatgtaacaaatacccctc |
115 |
Q |
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| T |
21268071 |
acaaataccccc-tcaaatttaaaacttatgtagcaaatacccctc |
21268115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 10326710 - 10326655
Alignment:
| Q |
44 |
taaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttat |
99 |
Q |
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|||||| ||||||||||||||||||| ||||||| || |||||||||| |||||| |
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| T |
10326710 |
taaaatttgtgtgattataaaaataggcaaatacccctctcaaatttaacacttat |
10326655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 9028 - 8971
Alignment:
| Q |
44 |
taaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgt |
101 |
Q |
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|||||| | ||||||||||||||||| ||||||| ||| |||| ||||| |||||||| |
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| T |
9028 |
taaaatctatgtgattataaaaataggcaaatacccccctcaactttaatacttatgt |
8971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 22924080 - 22924016
Alignment:
| Q |
45 |
aaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgtaacaaatac |
110 |
Q |
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| T |
22924080 |
aaaatttgtgtgattataaaaataaacaattatcctc-tcaaatttaaaacttatataacaaatac |
22924016 |
T |
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