View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_high_35 (Length: 410)

Name: NF18678_high_35
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_high_35
NF18678_high_35
[»] scaffold0257 (2 HSPs)
scaffold0257 (168-410)||(18943-19189)
scaffold0257 (1-111)||(18776-18886)
[»] chr3 (30 HSPs)
chr3 (202-410)||(28185824-28186031)
chr3 (200-410)||(28161778-28161988)
chr3 (241-410)||(27776465-27776634)
chr3 (217-410)||(28149883-28150079)
chr3 (220-410)||(11420911-11421100)
chr3 (220-399)||(27458882-27459060)
chr3 (244-374)||(28056490-28056620)
chr3 (244-374)||(28066915-28067045)
chr3 (239-409)||(28037381-28037550)
chr3 (220-410)||(28151573-28151762)
chr3 (247-340)||(28479942-28480035)
chr3 (247-340)||(28509125-28509218)
chr3 (316-395)||(27920260-27920339)
chr3 (316-395)||(27954345-27954424)
chr3 (203-268)||(28136277-28136341)
chr3 (223-290)||(26127518-26127585)
chr3 (223-290)||(26177568-26177635)
chr3 (51-110)||(38832958-38833017)
chr3 (316-410)||(8539289-8539383)
chr3 (368-410)||(28479893-28479935)
chr3 (368-410)||(28509076-28509118)
chr3 (319-410)||(17744524-17744615)
chr3 (319-410)||(19045844-19045935)
chr3 (60-110)||(40892805-40892855)
chr3 (49-110)||(9099178-9099239)
chr3 (373-410)||(27349214-27349251)
chr3 (373-410)||(27378552-27378589)
chr3 (70-103)||(46476510-46476543)
chr3 (223-279)||(26110447-26110503)
chr3 (370-410)||(26629631-26629671)
[»] chr2 (6 HSPs)
chr2 (300-396)||(8020834-8020930)
chr2 (51-110)||(45716500-45716559)
chr2 (51-110)||(8329653-8329712)
chr2 (373-410)||(22393525-22393562)
chr2 (51-111)||(15988885-15988945)
chr2 (70-110)||(33635713-33635753)
[»] chr1 (6 HSPs)
chr1 (51-107)||(43638397-43638453)
chr1 (70-110)||(14171836-14171876)
chr1 (51-110)||(963956-964015)
chr1 (50-103)||(42887974-42888027)
chr1 (70-110)||(1411598-1411638)
chr1 (74-110)||(26127286-26127322)
[»] chr8 (9 HSPs)
chr8 (70-110)||(27924503-27924543)
chr8 (58-109)||(18087247-18087298)
chr8 (49-110)||(16938898-16938959)
chr8 (51-110)||(42563194-42563253)
chr8 (51-110)||(44362292-44362351)
chr8 (70-111)||(30157745-30157786)
chr8 (70-110)||(468134-468174)
chr8 (70-110)||(4366322-4366362)
chr8 (51-111)||(34612227-34612287)
[»] chr5 (2 HSPs)
chr5 (52-111)||(19366808-19366867)
chr5 (69-110)||(19336835-19336876)
[»] chr4 (3 HSPs)
chr4 (77-111)||(21139318-21139352)
chr4 (51-111)||(53374996-53375056)
chr4 (51-107)||(47089213-47089269)
[»] chr7 (3 HSPs)
chr7 (51-108)||(45879115-45879172)
chr7 (51-110)||(6221098-6221157)
chr7 (51-111)||(34224321-34224381)
[»] chr6 (2 HSPs)
chr6 (49-110)||(31330520-31330581)
chr6 (78-111)||(30533715-30533748)
[»] scaffold0007 (1 HSPs)
scaffold0007 (51-107)||(185503-185559)
[»] scaffold0009 (1 HSPs)
scaffold0009 (51-110)||(140312-140371)
[»] scaffold0735 (1 HSPs)
scaffold0735 (50-103)||(927-980)
[»] scaffold0043 (1 HSPs)
scaffold0043 (373-410)||(52834-52871)
[»] scaffold0922 (1 HSPs)
scaffold0922 (242-310)||(1700-1767)
[»] scaffold0191 (1 HSPs)
scaffold0191 (70-110)||(4563-4603)


Alignment Details
Target: scaffold0257 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 168 - 410
Target Start/End: Original strand, 18943 - 19189
Alignment:
Q  168 acaagtgtcacagggacaccgattgacaagacccaaaaaa-tatattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggt 266  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  18943 acaagtgtcacagggacaccgactgacaagacccaaaaaaatatattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatgac 19042  T
Q  267 gatggacaaatagccatcacttctcctcctattgc---cataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaaca 363  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19043 gatggacaaatagccatcacttctcctcctattgctgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaaca 19142  T
Q  364 ttattgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19143 ttattgatgatcaaggtgaagactctttggatcaatattattttctt 19189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 18776 - 18886
Alignment:
Q  1 tgagtatattttatttaacaaagccttcaaaatgctaaaagaaccaaagattaaggaaatataaacgggaatattgtcttgaaaattatgtattctactt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18776 tgagtatattttatttaacaaagccttcaaaaagctaaaagaaccaaagattaaggaaatataaacgggaatattgtcttgaaaattatgtattctactt 18875  T
Q  101 tttgaaagttg 111  Q
    |||||||||||    
T  18876 tttgaaagttg 18886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 202 - 410
Target Start/End: Original strand, 28185824 - 28186031
Alignment:
Q  202 aaaaaatatattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgc 301  Q
    |||||| |||||||| |||||||||||||||||||||| | ||||||||| ||||||||||| |||| ||  |||| |||||  |||||||||| ||| |    
T  28185824 aaaaaacatattaag-acttcatgatgatatcatttgtatgtttgaatttttgtaggaatatagtgacggcgaaatggccatatcttctcctccaatttc 28185922  T
Q  302 cataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatat 401  Q
    ||| |||| || | || ||||||||||  || |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| |    
T  28185923 catgacaaggcatttttccactcaagacattcatgttaataacttgcaggaaactagtaacactgatgatgatcaaggtgaagactctttggatcaattt 28186022  T
Q  402 tattttctt 410  Q
    |||||||||    
T  28186023 tattttctt 28186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 200 - 410
Target Start/End: Original strand, 28161778 - 28161988
Alignment:
Q  200 ccaaaaaat-atattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctat 298  Q
    ||||||||| |||||||| |||||||||||||||||||||| | ||||||||| ||||| ||||| |||| ||  |||| |||||  |||||||||| ||    
T  28161778 ccaaaaaatcatattaag-acttcatgatgatatcatttgtatgtttgaatttttgtagtaatatagtgacggcgaaatggccatatcttctcctccaat 28161876  T
Q  299 tgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaa 398  Q
    | |||| |||| || | || |||||| ||| ||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  28161877 ttccatgacaaggcattttgccactccagacgttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaagactctttggatcaa 28161976  T
Q  399 tattattttctt 410  Q
    | ||||||||||    
T  28161977 ttttattttctt 28161988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 241 - 410
Target Start/End: Original strand, 27776465 - 27776634
Alignment:
Q  241 tatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaa 340  Q
    ||||||||| ||| |||||| |||| ||||| |||||||||||  |||||| ||| ||| ||||||||||||||| ||| |||||||||||||||||| |    
T  27776465 tatttgaatctgtttaggaacatggcgatggccaaatagccatatcttctcttccaatttccataacaaagcctcctactactcaagatgttgatgttga 27776564  T
Q  341 taacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
     |||||||||||||||||||| | || |||| ||||||||||| ||||||||||||||| ||||||||||    
T  27776565 aaacttgcaggaaactagtaagactaatgatcatcaaggtgaaaactctttggatcaattttattttctt 27776634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 410
Target Start/End: Original strand, 28149883 - 28150079
Alignment:
Q  217 gacttcatgatgatatcatttgtttatttgaatttg------tgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaa 310  Q
    ||||||||||||||||||||||| | |||||| |||      |||||||||||||||  ||  |||| |||||  |||||||    ||| |||||||||     
T  28149883 gacttcatgatgatatcatttgtatgtttgaacttgaatttttgtaggaatatggtggcggcgaaatggccatatcttctcca---atttccataacaag 28149979  T
Q  311 gcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |||||||| ||||||||||    
T  28149980 gcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaagagtcttaggatcaattttattttctt 28150079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 220 - 410
Target Start/End: Original strand, 11420911 - 11421100
Alignment:
Q  220 ttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttac 319  Q
    ||||||||||||| ||| || ||||||||||| | |||| | |||||||||  |||||||||||  |||||||||  ||||||||||||||||||  |||    
T  11420911 ttcatgatgatataattcgtatatttgaattttt-taggtagatggtgatgttcaaatagccatagcttctcctcaaattgccataacaaagcctgctac 11421009  T
Q  320 cactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    || |||||||||||||||||| | ||  ||||||||||||||   || ||||||||||||||| |||||||||||||| | ||||||||||    
T  11421010 cattcaagatgttgatgttaaaatctgtcaggaaactagtaaggctaatgatgatcaaggtgatgactctttggatcagttttattttctt 11421100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 220 - 399
Target Start/End: Complemental strand, 27459060 - 27458882
Alignment:
Q  220 ttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttac 319  Q
    |||||||||||||||||  ||||||||||||| |||||||  |||| ||||| | || || | |  ||||||| |  | |||||||||||||||||||||    
T  27459060 ttcatgatgatatcattcttttatttgaattt-tgtaggacgatggcgatggccgaagagtcgtagcttctcccctaactgccataacaaagcctcttac 27458962  T
Q  320 cactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaat 399  Q
    ||||||||||||||||||||| | || |||||||||||| || | ||  |||||||||||||||||||||||||||||||    
T  27458961 cactcaagatgttgatgttaaaatctggcaggaaactagcaagactaaggatgatcaaggtgaagactctttggatcaat 27458882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 374
Target Start/End: Original strand, 28056490 - 28056620
Alignment:
Q  244 ttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataa 343  Q
    |||||||| |||||||||||||||| ||  |||| |||||  ||| |||||| ||| ||||||||| |||||||||||||||||| ||| ||||||||||    
T  28056490 ttgaatttttgtaggaatatggtgacggcgaaatggccatatcttttcctccaatttccataacaaggcctcttaccactcaagaagttcatgttaataa 28056589  T
Q  344 cttgcaggaaactagtaacattattgatgat 374  Q
    |||||||||||||||||||| ||||||||||    
T  28056590 cttgcaggaaactagtaacactattgatgat 28056620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 374
Target Start/End: Original strand, 28066915 - 28067045
Alignment:
Q  244 ttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataa 343  Q
    |||||||| |||||||||||||||| ||  |||| |||||  ||| |||||| ||| ||||||||| |||||||||||||||||| ||| ||||||||||    
T  28066915 ttgaatttttgtaggaatatggtgacggcgaaatggccatatcttttcctccaatttccataacaaggcctcttaccactcaagaagttcatgttaataa 28067014  T
Q  344 cttgcaggaaactagtaacattattgatgat 374  Q
    |||||||||||||||||||| ||||||||||    
T  28067015 cttgcaggaaactagtaacactattgatgat 28067045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 239 - 409
Target Start/End: Original strand, 28037381 - 28037550
Alignment:
Q  239 tttatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgtt 338  Q
    ||||||||||||| |||||||| | |||||||| |||| ||||||  |||||||| | ||| |||||||||||||| |||||||| ||||||||||| |     
T  28037381 tttatttgaattt-tgtaggaagagggtgatggccaaagagccatagcttctccttcaattaccataacaaagcctgttaccactgaagatgttgatctc 28037479  T
Q  339 aataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttct 409  Q
    || |||| ||  ||||||||||||| || ||||| ||||||| |||||||||||||||| | |||||||||    
T  28037480 aaaaactggcgcgaaactagtaacactaatgatggtcaaggtaaagactctttggatcagtgttattttct 28037550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 410
Target Start/End: Original strand, 28151573 - 28151762
Alignment:
Q  220 ttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttac 319  Q
    ||||| |||||||||||  ||||||||||||| |||||||| | |||||    |||| ||| ||  ||| | |||| |||| ||||||||||||| | ||    
T  28151573 ttcataatgatatcattcttttatttgaattt-tgtaggaagaaggtgacaaccaaagagcaatagcttatactccaattgacataacaaagcctgtaac 28151671  T
Q  320 cactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    ||||||||||||||||||| | | || ||||||||||||||||| || |||||||||||||||||| ||||||||||  | ||||||||||    
T  28151672 cactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgatgatcaaggtgaagaatctttggatcgcttttattttctt 28151762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 28480035 - 28479942
Alignment:
Q  247 aatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaa 340  Q
    ||||||||||||||| ||||||  | |||||||||||  ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||    
T  28480035 aatttgtgtaggaatgtggtgactgccaaatagccataccttctcctcctattgccataacaaatcctcttaccactcaggatgttgatattaa 28479942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 28509218 - 28509125
Alignment:
Q  247 aatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaa 340  Q
    ||||||||||||||| ||||||  | |||||||||||  ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||    
T  28509218 aatttgtgtaggaatgtggtgactgccaaatagccataccttctcctcctattgccataacaaatcctcttaccactcaggatgttgatattaa 28509125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 27920260 - 27920339
Alignment:
Q  316 ttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggat 395  Q
    ||||||||||| ||||||||| ||| | || ||||||||||||||||| || |||||||||||||||| |||||||||||    
T  27920260 ttaccactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggat 27920339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 27954345 - 27954424
Alignment:
Q  316 ttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggat 395  Q
    ||||||||||| ||||||||| ||| | || ||||||||||||||||| || |||||||||||||||| |||||||||||    
T  27954345 ttaccactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggat 27954424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 28136277 - 28136341
Alignment:
Q  203 aaaaatatattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtga 268  Q
    ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  28136277 aaaaaaatattaag-acttgatgatgatatcatttgtttatttgaatttgtgtaggaatgtggtga 28136341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 26127585 - 26127518
Alignment:
Q  223 atgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttct 290  Q
    ||||| |||||||||||| |||||||| |||||||||| |||||||| | ||||||||||| ||||||    
T  26127585 atgataatatcatttgttgatttgaatctgtgtaggaagatggtgatagccaaatagccatgacttct 26127518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 26177635 - 26177568
Alignment:
Q  223 atgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccatcacttct 290  Q
    ||||| |||||||||||| |||||||| |||||||||| |||||||| | ||||||||||| ||||||    
T  26177635 atgataatatcatttgttgatttgaatctgtgtaggaagatggtgatagccaaatagccatgacttct 26177568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 38832958 - 38833017
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    ||||| || |||||| || |||||||| ||||||||||||||||||||||||||||||||    
T  38832958 ttaagaaattataaaaggaaatattgtattgaaaattatgtattctactttttgaaagtt 38833017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 410
Target Start/End: Complemental strand, 8539383 - 8539289
Alignment:
Q  316 ttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    |||||||||||||||||||||||||    | ||||||||||||||||| || |  | ||||||||||||| || |||||||| | ||||||||||    
T  8539383 ttaccactcaagatgttgatgttaaactttggcaggaaactagtaacactaatattaatcaaggtgaagaatccttggatcagttttattttctt 8539289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 28479935 - 28479893
Alignment:
Q  368 tgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  28479935 tgatgatcaaggtgaagactctttggatcaattttattttctt 28479893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 28509118 - 28509076
Alignment:
Q  368 tgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  28509118 tgatgatcaaggtgaagactctttggatcaattttattttctt 28509076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 410
Target Start/End: Complemental strand, 17744615 - 17744524
Alignment:
Q  319 ccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    |||||||||||||||||||| | | || |||||||||||| || | || |||||| |||||| || | |||||||||| || ||||||||||    
T  17744615 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttctt 17744524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 410
Target Start/End: Complemental strand, 19045935 - 19045844
Alignment:
Q  319 ccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    |||||||||||||||||||| | | || |||||||||||| || | || |||||| |||||| || | |||||||||| || ||||||||||    
T  19045935 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttctt 19045844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 40892805 - 40892855
Alignment:
Q  60 tataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||| || |||||| ||||| ||||| ||||||||||||||||||||||    
T  40892805 tataaaaggaaatattttcttggaaattgtgtattctactttttgaaagtt 40892855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 9099239 - 9099178
Alignment:
Q  49 gattaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||||| |||||| || |||||||| ||| ||||  ||||||| ||||||||||||||    
T  9099239 gattaaggaattataaaaggaaatattgtattggaaatcgtgtattcaactttttgaaagtt 9099178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 27349214 - 27349251
Alignment:
Q  373 atcaaggtgaagactctttggatcaatattattttctt 410  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  27349214 atcaaggtgaagactttttggatcaattttattttctt 27349251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 27378552 - 27378589
Alignment:
Q  373 atcaaggtgaagactctttggatcaatattattttctt 410  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  27378552 atcaaggtgaagactttttggatcaattttattttctt 27378589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 46476543 - 46476510
Alignment:
Q  70 aatattgtcttgaaaattatgtattctacttttt 103  Q
    |||||| |||||||||||||||||||||||||||    
T  46476543 aatattctcttgaaaattatgtattctacttttt 46476510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 26110503 - 26110447
Alignment:
Q  223 atgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatag 279  Q
    ||||| |||||||||||| |||||||| | |||||||| |||||||| | |||||||    
T  26110503 atgataatatcatttgttgatttgaatctatgtaggaagatggtgatagccaaatag 26110447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 26629631 - 26629671
Alignment:
Q  370 atgatcaaggtgaagactctttggatcaatattattttctt 410  Q
    ||||| |||||||||||| ||||||||||| ||||||||||    
T  26629631 atgatgaaggtgaagactttttggatcaattttattttctt 26629671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 396
Target Start/End: Original strand, 8020834 - 8020930
Alignment:
Q  300 gccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatc 396  Q
    ||||||||||||||||| ||||||||||||||||||||| | | || ||||||||||||||||| || ||| |||| ||||||||| ||||||||||    
T  8020834 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatc 8020930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 45716559 - 45716500
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| |||||| || |||||||||||| |||||||| |||||||||||||||||||    
T  45716559 ttaaggaattataaaaggaaatattgtcttggaaattatggattctactttttgaaagtt 45716500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 8329653 - 8329712
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| |||| | || |||||| | ||| ||||||||||||||||||||||||||||    
T  8329653 ttaaggaattatataaggaaatattattttggaaattatgtattctactttttgaaagtt 8329712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 22393525 - 22393562
Alignment:
Q  373 atcaaggtgaagactctttggatcaatattattttctt 410  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  22393525 atcaaggtgaagactttttggatcaattttattttctt 22393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 15988945 - 15988885
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 111  Q
    |||||| ||||||||  | |||||| || |||||||| ||||||||||||| |||||||||    
T  15988945 ttaagggaatataaaacgaaatattctcatgaaaattgtgtattctactttctgaaagttg 15988885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 33635713 - 33635753
Alignment:
Q  70 aatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||||||| ||||| ||||||||||||||| ||||||    
T  33635713 aatattgtcttggaaattgtgtattctactttttaaaagtt 33635753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 43638453 - 43638397
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaa 107  Q
    |||||||| |||||| || |||||||||||||||||| |||||||||||||||||||    
T  43638453 ttaaggaattataaaaggaaatattgtcttgaaaattgtgtattctactttttgaaa 43638397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 14171836 - 14171876
Alignment:
Q  70 aatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  14171836 aatattgtcttgaaaattgtgtattttactttttgaaagtt 14171876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 963956 - 964015
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| |||||  || |||||||||||| ||||| ||||||||||||||| ||||||    
T  963956 ttaaggaattataataggaaatattgtcttggaaattgtgtattctactttttcaaagtt 964015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 42887974 - 42888027
Alignment:
Q  50 attaaggaaatataaacgggaatattgtcttgaaaattatgtattctacttttt 103  Q
    ||||| ||| |||||| || |||||| |||||||||||||||||| ||||||||    
T  42887974 attaaagaattataaaaggaaatattttcttgaaaattatgtattttacttttt 42888027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 1411638 - 1411598
Alignment:
Q  70 aatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  1411638 aatattgtcttaaaaattgtgtattctactttttgatagtt 1411598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 26127286 - 26127322
Alignment:
Q  74 ttgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  26127286 ttgtcttggaaattgtgtattctactttttgaaagtt 26127322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 27924503 - 27924543
Alignment:
Q  70 aatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  27924503 aatattatcttgaaaattatgtattctactttttgaaagtt 27924543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 18087298 - 18087247
Alignment:
Q  58 aatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagt 109  Q
    |||||||| || |||||| ||||||||||| |||||||||||||||||||||    
T  18087298 aatataaaaggaaatattctcttgaaaattgtgtattctactttttgaaagt 18087247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 16938898 - 16938959
Alignment:
Q  49 gattaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||||| |||||  || |||| ||||||||||||| ||||||||||||||| ||||||    
T  16938898 gattaaggaattataagaggaaatagtgtcttgaaaattgtgtattctacttttttaaagtt 16938959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 42563194 - 42563253
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| |||||| || |||||||| ||||||||| || |||||| ||||||||||||    
T  42563194 ttaaggaattataaaaggaaatattgtattgaaaattctgcattctattttttgaaagtt 42563253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 44362292 - 44362351
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| ||||||  | |||||||| ||||||||| ||||||||| ||||||||||||    
T  44362292 ttaaggaattataaaaagaaatattgtattgaaaattgtgtattctattttttgaaagtt 44362351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 30157786 - 30157745
Alignment:
Q  70 aatattgtcttgaaaattatgtattctactttttgaaagttg 111  Q
    |||||| ||||| ||||| |||||||||||||||||||||||    
T  30157786 aatattttcttggaaattgtgtattctactttttgaaagttg 30157745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 468174 - 468134
Alignment:
Q  70 aatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| ||||||||| | ||||||||||||||||||||    
T  468174 aatattgttttgaaaattgtctattctactttttgaaagtt 468134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 4366362 - 4366322
Alignment:
Q  70 aatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||| | ||||||||||||||||||||||||| ||||||    
T  4366362 aatattattttgaaaattatgtattctactttttaaaagtt 4366322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 34612227 - 34612287
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 111  Q
    ||||||| ||||||| || |||||| |||||||||||||||||| ||   |||||||||||    
T  34612227 ttaaggagatataaaaggaaatattctcttgaaaattatgtattatatcctttgaaagttg 34612287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 19366867 - 19366808
Alignment:
Q  52 taaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 111  Q
    ||||||| |||||| || || ||||||||| ||||| |||||||||||||||||||||||    
T  19366867 taaggaattataaaaggaaacattgtcttggaaattgtgtattctactttttgaaagttg 19366808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 19336876 - 19336835
Alignment:
Q  69 gaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    ||||||| |||| |||||| ||||||||||||||||||||||    
T  19336876 gaatattttcttaaaaattgtgtattctactttttgaaagtt 19336835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 21139352 - 21139318
Alignment:
Q  77 tcttgaaaattatgtattctactttttgaaagttg 111  Q
    |||||||||||||||||||||||||||||||||||    
T  21139352 tcttgaaaattatgtattctactttttgaaagttg 21139318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 53375056 - 53374996
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 111  Q
    |||||| |||||||| || |||||| ||||| ||||| ||||||||||||||| |||||||    
T  53375056 ttaagggaatataaaaggaaatattctcttggaaattgtgtattctactttttaaaagttg 53374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 47089213 - 47089269
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaa 107  Q
    |||||||| |||||| || ||| || ||||||||||| |||||| ||||||||||||    
T  47089213 ttaaggaattataaaaggaaatgttttcttgaaaattgtgtattttactttttgaaa 47089269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 45879115 - 45879172
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaag 108  Q
    |||||||| |||||| || ||| |||||||| ||||| ||||||||||||||||||||    
T  45879115 ttaaggaattataaaaggaaattttgtcttggaaattgtgtattctactttttgaaag 45879172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 6221157 - 6221098
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| |||||| ||  ||||||||||| ||||| | ||||||||||||||||||||    
T  6221157 ttaaggaattataaaaggagatattgtcttggaaattgtatattctactttttgaaagtt 6221098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 34224381 - 34224321
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 111  Q
    |||||||| |||||| || | |||| ||||||||||| | ||||||||||||| |||||||    
T  34224381 ttaaggaattataaatggaattattctcttgaaaattgtatattctactttttcaaagttg 34224321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 31330520 - 31330581
Alignment:
Q  49 gattaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||| ||| |||||  || ||| |||||||||||||| ||||||||||||||||||||||    
T  31330520 gattaaagaattataagaggaaattttgtcttgaaaattgtgtattctactttttgaaagtt 31330581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 30533748 - 30533715
Alignment:
Q  78 cttgaaaattatgtattctactttttgaaagttg 111  Q
    |||||||||| |||||||||||||||||||||||    
T  30533748 cttgaaaattgtgtattctactttttgaaagttg 30533715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 185559 - 185503
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaa 107  Q
    |||||||| |||||| |  |||||||| ||||||||| |||||||||||||||||||    
T  185559 ttaaggaattataaaagaaaatattgtattgaaaattgtgtattctactttttgaaa 185503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 140371 - 140312
Alignment:
Q  51 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| ||||||  | ||| || ||||||||||||||||||||| ||||||||||||    
T  140371 ttaaggaattataaaatgaaattttatcttgaaaattatgtattctattttttgaaagtt 140312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 927 - 980
Alignment:
Q  50 attaaggaaatataaacgggaatattgtcttgaaaattatgtattctacttttt 103  Q
    ||||| ||| |||||| || |||||| |||||||||||||||||| ||||||||    
T  927 attaaagaattataaaaggaaatattttcttgaaaattatgtattttacttttt 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 52871 - 52834
Alignment:
Q  373 atcaaggtgaagactctttggatcaatattattttctt 410  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  52871 atcaaggtgaagactttttggatcaattttattttctt 52834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 1700 - 1767
Alignment:
Q  242 atttgaatttgtgtaggaatatggtgatggacaaatagccatcacttctcctcctattgccataacaaa 310  Q
    |||||||||| |||||||| |||||||||| |||| ||||||  |||  ||||| ||||||||||||||    
T  1700 atttgaattt-tgtaggaagatggtgatggccaaagagccatagctttccctccaattgccataacaaa 1767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 4563 - 4603
Alignment:
Q  70 aatattgtcttgaaaattatgtattctactttttgaaagtt 110  Q
    |||||||| ||||||||| ||||||| ||||||||||||||    
T  4563 aatattgtattgaaaattgtgtattccactttttgaaagtt 4603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University