View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_high_36 (Length: 397)

Name: NF18678_high_36
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_high_36
NF18678_high_36
[»] chr3 (15 HSPs)
chr3 (14-383)||(22946381-22946750)
chr3 (14-383)||(22971928-22972297)
chr3 (169-378)||(22986259-22986468)
chr3 (221-375)||(22941435-22941589)
chr3 (176-366)||(23036164-23036354)
chr3 (180-366)||(23039035-23039221)
chr3 (176-276)||(23032783-23032883)
chr3 (177-303)||(23017119-23017245)
chr3 (192-366)||(23148752-23148926)
chr3 (221-374)||(22831821-22831974)
chr3 (192-372)||(23145908-23146088)
chr3 (170-372)||(23024260-23024462)
chr3 (320-366)||(23032708-23032754)
chr3 (259-324)||(22906334-22906399)
chr3 (221-294)||(22916732-22916805)
[»] chr8 (2 HSPs)
chr8 (177-383)||(23610194-23610400)
chr8 (221-374)||(5594091-5594244)
[»] chr1 (3 HSPs)
chr1 (146-372)||(12609893-12610119)
chr1 (148-378)||(15885750-15885980)
chr1 (170-380)||(12636981-12637191)
[»] chr6 (2 HSPs)
chr6 (176-366)||(21779807-21779997)
chr6 (230-379)||(12438285-12438434)
[»] scaffold0059 (1 HSPs)
scaffold0059 (177-359)||(62154-62336)
[»] scaffold0554 (1 HSPs)
scaffold0554 (177-366)||(6571-6760)
[»] chr5 (7 HSPs)
chr5 (312-378)||(7154485-7154551)
chr5 (312-375)||(7141715-7141778)
chr5 (312-378)||(41305394-41305460)
chr5 (312-378)||(31177688-31177754)
chr5 (312-378)||(31187751-31187817)
chr5 (312-378)||(31225961-31226027)
chr5 (312-372)||(41654699-41654759)
[»] chr2 (1 HSPs)
chr2 (278-372)||(2433600-2433694)
[»] chr4 (1 HSPs)
chr4 (312-378)||(17248568-17248634)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 22946750 - 22946381
Alignment:
Q  14 agagtaatgaagaaagcacaagctgaagtgagagtgttattcnnnnnnngaggaaaaattgatgaaattttcctttctgagttaatatacttgaaagcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22946750 agagtaatgaagaaagcacaagctgaagtgagagtgttattcaaaaaaagaggaaaaattgatgaaattttcctttctgagttaatatacttgaaagcaa 22946651  T
Q  114 taatcaaagaggtcttaagaatgcacctacctggtcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatcacataccaatgaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22946650 taatcaaagaggtcttaagaatgcacctacctggtcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatcacataccaatcaa 22946551  T
Q  214 tagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgtt 313  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22946550 tagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgtt 22946451  T
Q  314 gatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcatcaact 383  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22946450 gatttcaaaggaacaaattttgagtacattccatttggtgccggaaggagaatttgtccgggcatcaact 22946381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 22972297 - 22971928
Alignment:
Q  14 agagtaatgaagaaagcacaagctgaagtgagagtgttattcnnnnnnngaggaaaaattgatgaaattttcctttctgagttaatatacttgaaagcaa 113  Q
    |||||| |||||||||||||||||||||| |||||||||||        |||||||| |||||||||  ||  |||||||||||| ||||||||||| ||    
T  22972297 agagtattgaagaaagcacaagctgaagtaagagtgttattatataaaagaggaaaatttgatgaaaccttaatttctgagttaaaatacttgaaagtaa 22972198  T
Q  114 taatcaaagaggtcttaagaatgcacctacctggtcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatcacataccaatgaa 213  Q
    | |||||||||||||||||||||||||  ||||||||||||||| | || |||||||||| |||||| ||||||||||||||||||||||||||||| ||    
T  22972197 tcatcaaagaggtcttaagaatgcaccctcctggtcctcttttagtaccaagggtgtgtggacaagcttgtgagattgatggttatcacataccaatcaa 22972098  T
Q  214 tagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgtt 313  Q
     |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22972097 aagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctctt 22971998  T
Q  314 gatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcatcaact 383  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||    
T  22971997 gatttcaaaggaacaaattttgagtacattccatttggtgctggaagaagaatttgtccaggcattaact 22971928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 169 - 378
Target Start/End: Complemental strand, 22986468 - 22986259
Alignment:
Q  169 gtgtgcacaagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggact 268  Q
    ||||| |||||| ||||||||| |||||||| |||||||  | || ||||| ||  |  | |||||||||||||||||||||||||| |||||||||| |    
T  22986468 gtgtggacaagcttgtgagattaatggttattacatacctgtaaaaagtagagtcctcgttaatgcttgggccattggacgggatcctaaatattggaat 22986369  T
Q  269 gatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgt 368  Q
    || || ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  22986368 gaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaaggagaattt 22986269  T
Q  369 gtccgggcat 378  Q
    |||| |||||    
T  22986268 gtcctggcat 22986259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 375
Target Start/End: Original strand, 22941435 - 22941589
Alignment:
Q  221 gtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttca 320  Q
    |||||| | |||||||||||||||||| | ||||||||  |||||  ||| ||||| |  |||||||||||||| |||||||| |||| ||| ||||  |    
T  22941435 gtgatagtgaatgcttgggccattggaagagatccaaatcattgggatgacccagagagattttatcctgaaaggtttattgaaagttgtgtagattata 22941534  T
Q  321 aaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccggg 375  Q
    | |||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  22941535 agggaaataattttgagttcattccatttggtgctggaagaagaatgtgtccggg 22941589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 366
Target Start/End: Complemental strand, 23036354 - 23036164
Alignment:
Q  176 caagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccag 275  Q
    |||||||||| |||  |||||||||||||||| || || |||| ||| | ||| ||||||||||| |||| | | |||||||| || |||||||| ||||    
T  23036354 caagcatgtgtgataaatggttatcacatacctattaagagtaaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccag 23036255  T
Q  276 ataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 366  Q
    | |  |||||||| || ||||| || || ||  || |||| | |||||| | ||| |||||||||||||| |||||||||||||| |||||    
T  23036254 agagattttatcccgagagattcatcgacagcgctattgactacaaagggagtaactttgagtacattccttttggtgccggaagaagaat 23036164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 366
Target Start/End: Complemental strand, 23039221 - 23039035
Alignment:
Q  180 catgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataa 279  Q
    ||||||||||  |||||||||||||||| || || |||| ||||||| ||||||||||||| |||| | | |||||||| || |||||||| || || |     
T  23039221 catgtgagataaatggttatcacatacctattaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggactgagccggagag 23039122  T
Q  280 gttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 366  Q
     |||||||| || |||||  |||| ||  |  |||| |  ||||||| ||||| |||||||||||| |||||||||||||| |||||    
T  23039121 attttatccagagagattccttgacagcgccattgactataaaggaagtaattatgagtacattccttttggtgccggaagaagaat 23039035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 23032883 - 23032783
Alignment:
Q  176 caagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccag 275  Q
    ||||||||||||||  ||||||||||||||||||| || |||| ||||||| ||||||||||||| |||| | | |||||||| || |||||||| ||||    
T  23032883 caagcatgtgagataaatggttatcacataccaattaaaagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactggactgaaccag 23032784  T
Q  276 a 276  Q
    |    
T  23032783 a 23032783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 23017245 - 23017119
Alignment:
Q  177 aagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccaga 276  Q
    |||||||||||||  ||||||||||||||||| | || | || ||||||||| ||||||||||| || | | | |||||||| || |||||||| |||||    
T  23017245 aagcatgtgagatacatggttatcacataccagttaagactaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccaga 23017146  T
Q  277 taagttttatcctgaaagatttattga 303  Q
     ||||||||||| || ||||| |||||    
T  23017145 gaagttttatccagagagattcattga 23017119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 366
Target Start/End: Complemental strand, 23148926 - 23148752
Alignment:
Q  192 atggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctga 291  Q
    ||||||||||||| || || || | ||  |||||||||||||||||||| |||| | | ||| |||| || |||||||| ||||| | ||||||||| ||    
T  23148926 atggttatcacattccgattaagactaaagtgataatcaatgcttgggcaattgcaagagattcaaactactggactgaaccagagaggttttatccaga 23148827  T
Q  292 aagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 366  Q
     ||||| ||||| ||   | |||| |  ||||| | ||| || ||||||||||| |||||||||||||| |||||    
T  23148826 gagattcattgaaagcgatattgactataaagggagtaacttcgagtacattccttttggtgccggaagaagaat 23148752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 374
Target Start/End: Complemental strand, 22831974 - 22831821
Alignment:
Q  221 gtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttca 320  Q
    |||||| | ||||||||||| |||||| | ||||||||  |||||   || ||||| |  ||||||||||||||||| |||||||||| ||| || |  |    
T  22831974 gtgatagtgaatgcttgggctattggaagagatccaaatcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactata 22831875  T
Q  321 aaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgg 374  Q
    | || | ||||||||||| |||||| |||||||| || || ||||||| |||||    
T  22831874 agggtaataattttgagttcattccttttggtgctggtagaagaatgtttccgg 22831821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 372
Target Start/End: Complemental strand, 23146088 - 23145908
Alignment:
Q  192 atggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctga 291  Q
    |||||||||||||||| || || | || |||| || |||||||||||||  ||| | | |||||||| || |||||||| ||||| | ||||||||| ||    
T  23146088 atggttatcacataccgattaagactaaggtgttagtcaatgcttgggcagttgcaagagatccaaactactggactgaaccagagaggttttatccaga 23145989  T
Q  292 aagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtcc 372  Q
     ||||| || || ||   | |||| |  ||||| | ||| |||||||||||||| |||||||| ||||| ||||| |||||    
T  23145988 gagattcatcgacagcgatattgactataaagggagtaactttgagtacattccttttggtgctggaagaagaatatgtcc 23145908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 372
Target Start/End: Complemental strand, 23024462 - 23024260
Alignment:
Q  170 tgtgcacaagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactg 269  Q
    ||||| ||| ||||| |||| || |||||| |||| ||||  || | || ||||||| ||||||||||||| |||| | | |||||||| || ||||| |    
T  23024462 tgtgctcaatcatgtaagatagacggttatgacattccaactaagactaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggaccg 23024363  T
Q  270 atccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtg 369  Q
    | ||||| | ||||||||| || ||||| || ||||||  | |||| |  ||||| | ||| |||||||| ||||| |||||||| ||| | ||||| ||    
T  23024362 aaccagagaggttttatccagagagattcatcgatagtgatattgactataaagggagtaactttgagtatattccttttggtgcgggacgaagaatatg 23024263  T
Q  370 tcc 372  Q
    |||    
T  23024262 tcc 23024260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 23032754 - 23032708
Alignment:
Q  320 aaaggaactaattttgagtacattccatttggtgccggaaggagaat 366  Q
    ||||||| |||||||||||||||||| |||||||||||||| |||||    
T  23032754 aaaggaagtaattttgagtacattccctttggtgccggaagaagaat 23032708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 22906399 - 22906334
Alignment:
Q  259 atattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaagg 324  Q
    |||||||| |||  |||| || ||||||||||||||||| |||||| |||| ||||||| ||||||    
T  22906399 atattggattgaagcagagaaattttatcctgaaagattaattgattgttcagttgattacaaagg 22906334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 22916732 - 22916805
Alignment:
Q  221 gtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctgaaag 294  Q
    |||||| | |||||||||||||||||| | ||||||||  |||||  ||||||||| |  ||||||||||||||    
T  22916732 gtgatagtgaatgcttgggccattggaagagatccaaataattgggatgatccagaaagattttatcctgaaag 22916805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 177 - 383
Target Start/End: Complemental strand, 23610400 - 23610194
Alignment:
Q  177 aagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccaga 276  Q
    |||| ||||||||| |||| ||||| |||||  | || ||||| ||  |||| ||||||||||| || ||| ||||||| |||||||||| ||| |||||    
T  23610400 aagcttgtgagattaatggctatcatatacctgtaaaaagtagagtcctaataaatgcttgggcaataggaagggatcctaaatattggaatgacccaga 23610301  T
Q  277 taagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggc 376  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||  ||||||||||||||||| ||||||||||||||| || |||||||| ||||| |||    
T  23610300 taagttttatcctgaaaggtttattgatagctctattgatttctcaggaactaattttgagttcattccatttggtgctggtaggagaatttgtcccggc 23610201  T
Q  377 atcaact 383  Q
    || ||||    
T  23610200 atgaact 23610194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 374
Target Start/End: Original strand, 5594091 - 5594244
Alignment:
Q  221 gtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttca 320  Q
    |||||| | ||||||||||| |||||| | ||||||||  |||||   || ||||| |  ||||||||||||||||| |||||||||| ||| || |  |    
T  5594091 gtgatagtgaatgcttgggctattggaagagatccaaatcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactata 5594190  T
Q  321 aaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgg 374  Q
    | || | ||||||||||| |||||| |||||||| || || ||||||| |||||    
T  5594191 agggtaataattttgagttcattccttttggtgctggtagaagaatgtttccgg 5594244  T

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Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 146 - 372
Target Start/End: Complemental strand, 12610119 - 12609893
Alignment:
Q  146 ggtcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattg 245  Q
    |||||||||||| |||| || |  |||| ||||||||||||||||||||| ||||  |||||||| || || | ||||||| ||||||| ||||| ||||    
T  12610119 ggtcctcttttacttccaagagaatgtggacaagcatgtgagattgatgggtatcgtataccaatcaaaagcaaggtgatagtcaatgcatgggcgattg 12610020  T
Q  246 gacgggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattcc 345  Q
    || | |||||||| || |||||||| ||||| ||||||||||| || ||||| || | ||| ||| |||| | |||||| | ||||||||||||||||||    
T  12610019 gaagagatccaaagtactggactgaaccagagaagttttatccggagagattcatcggtagctctattgactacaaagggaataattttgagtacattcc 12609920  T
Q  346 atttggtgccggaaggagaatgtgtcc 372  Q
     |||||||| ||||| ||||| |||||    
T  12609919 ctttggtgctggaagaagaatatgtcc 12609893  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 148 - 378
Target Start/End: Original strand, 15885750 - 15885980
Alignment:
Q  148 tcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattgga 247  Q
    |||||||||| |||| || |  |||| ||||||||||||||||||||||||||| |||||||  || || | ||||||| ||||||| ||||| ||||||    
T  15885750 tcctcttttacttccaagagaatgtgaacaagcatgtgagattgatggttatcatataccaaccaaaagcaaggtgatagtcaatgcatgggcgattgga 15885849  T
Q  248 cgggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccat 347  Q
     | |||||||| ||||||||||| ||||| | ||||||||| || ||||| |||| ||| ||| |||| |  ||||| | |||||||||||||||||| |    
T  15885850 agagatccaaagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattcctt 15885949  T
Q  348 ttggtgccggaaggagaatgtgtccgggcat 378  Q
    ||||| | ||||| ||||| || ||||||||    
T  15885950 ttggttctggaagaagaatatgcccgggcat 15885980  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 380
Target Start/End: Complemental strand, 12637191 - 12636981
Alignment:
Q  170 tgtgcacaagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactg 269  Q
    |||| |||||||||||| ||||| || ||||| ||||||   || |||| ||||||| | ||||| ||| | |||||  | |||||||| || |||||||    
T  12637191 tgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactg 12637092  T
Q  270 atccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtg 369  Q
    | ||||| | |||| |||| || ||||| |||| ||| ||| |||| | |||||||| |||||||||||||||||| |||||||| ||||| ||||| ||    
T  12637091 aaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaagaagaatatg 12636992  T
Q  370 tccgggcatca 380  Q
     || |||||||    
T  12636991 cccaggcatca 12636981  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 366
Target Start/End: Complemental strand, 21779997 - 21779807
Alignment:
Q  176 caagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccag 275  Q
    ||||||||||| ||  ||||||| ||||| || || || | || ||||||||||||||||||||| |||| | | |||||||| || |||||||| ||||    
T  21779997 caagcatgtgatataaatggttaccacattccgattaagactaaggtgataatcaatgcttgggcaattgcaagagatccaaactactggactgaaccag 21779898  T
Q  276 ataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 366  Q
    | | ||||||||| || ||||| || |||||   | |||| || ||||| | ||||||||||||||||||||||||||||||||| |||||    
T  21779897 agatgttttatccagagagattcatcgatagcgatattgactttaaagggagtaattttgagtacattccatttggtgccggaagaagaat 21779807  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 379
Target Start/End: Complemental strand, 12438434 - 12438285
Alignment:
Q  230 aatgcttgggccattggacgggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacta 329  Q
    ||||| ||||| |||||| | || ||||| ||||||| |||   ||| |||||| ||||||| |||||||||||| || |  |||||| ||||||  |||    
T  12438434 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgattgtccaattgattacaaagggtcta 12438335  T
Q  330 attttgagtacattccatttggtgccggaaggagaatgtgtccgggcatc 379  Q
    |||| ||||  || || |||||||| ||||| ||||||||||| ||||||    
T  12438334 atttcgagtttataccttttggtgctggaagaagaatgtgtcccggcatc 12438285  T

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Target: scaffold0059 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 359
Target Start/End: Complemental strand, 62336 - 62154
Alignment:
Q  177 aagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccaga 276  Q
    ||||||||||||||||||| ||||| ||||||||||| |  | | ||||| | ||||| ||||| || ||| | |||||||  || ||||| || |||||    
T  62336 aagcatgtgagattgatgggtatcatataccaatgaaaacaaagctgatagttaatgcatgggcaatcggaagagatccaaggtactggacggaaccaga 62237  T
Q  277 taagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaa 359  Q
     | ||||||||| || ||||| |||| ||||||| |||| | ||| || | |||||| ||||||||||| |||||||| ||||    
T  62236 gaggttttatccagagagattcattggtagttctattgactacaacgggaataatttcgagtacattccttttggtgctggaa 62154  T

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Target: scaffold0554 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 366
Target Start/End: Original strand, 6571 - 6760
Alignment:
Q  177 aagcatgtgagattgatggttatcacataccaatgaatagtagggtgataatcaatgcttgggccattggacgggatccaaaatattggactgatccaga 276  Q
    |||||||||||||  |||||||| |||||||  | |  |||| ||||||||||||||||||||| |||| | | |||||||| |  |||||||| |||||    
T  6571 aagcatgtgagataaatggttataacataccgtttaggagtaaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccaga 6670  T
Q  277 taagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 366  Q
     | ||||||||| || ||||| | ||| ||  || |||| |  |||||   |||||||||||||||||| |||||||| ||||| |||||    
T  6671 gaggttttatccagagagattcactgacagcactattgactataaagggggtaattttgagtacattccttttggtgctggaagaagaat 6760  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 7154485 - 7154551
Alignment:
Q  312 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 378  Q
    ||||||||||||||| |||||||||||| ||||| |||||||| ||||| ||||||||||| |||||    
T  7154485 ttgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaatgtgtccaggcat 7154551  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 7141715 - 7141778
Alignment:
Q  312 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccggg 375  Q
    ||||||||||||||| ||| || ||||||||||| || || || ||||||||||||||||||||    
T  7141715 ttgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccggg 7141778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 41305394 - 41305460
Alignment:
Q  312 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 378  Q
    ||||||||||||| ||  | ||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  41305394 ttgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggcat 41305460  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 31177754 - 31177688
Alignment:
Q  312 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 378  Q
    ||||||||||||| || || ||||||||||| || || ||||| ||||| ||||||||||| |||||    
T  31177754 ttgatttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgtgtccaggcat 31177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 31187817 - 31187751
Alignment:
Q  312 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 378  Q
    ||||||||||||| || |||||||| ||||| || || ||||| ||||| ||||||||||| |||||    
T  31187817 ttgatttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgtgtccaggcat 31187751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 31225961 - 31226027
Alignment:
Q  312 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 378  Q
    ||||||||||||| || |||||||| ||||| || || ||||| ||||| ||||||||||| |||||    
T  31225961 ttgatttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgtgtccaggcat 31226027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 41654699 - 41654759
Alignment:
Q  312 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtcc 372  Q
    ||||||||| |||  |||||||||||| ||| || |||||||| |||| ||||||||||||    
T  41654699 ttgatttcagagggtctaattttgagttcataccttttggtgcaggaaagagaatgtgtcc 41654759  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 372
Target Start/End: Original strand, 2433600 - 2433694
Alignment:
Q  278 aagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtcc 372  Q
    |||||||||||||| || || || ||| ||   ||||||| ||||||  |||||||||||||||| || |||||||| ||||||||||| |||||    
T  2433600 aagttttatcctgagaggttcatggattgtctagttgattacaaagggtctaattttgagtacataccttttggtgcaggaaggagaatatgtcc 2433694  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 17248634 - 17248568
Alignment:
Q  312 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 378  Q
    ||||||||||||| |  ||||| || ||||| ||||||||||| |||||||| || |||||||||||    
T  17248634 ttgatttcaaaggcatgaatttcgaatacataccatttggtgctggaaggaggatttgtccgggcat 17248568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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